Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6066
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...   160   1e-39
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...   160   1e-39
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    30   1.6  
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    29   3.6  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score =  160 bits (388), Expect = 1e-39
 Identities = 72/132 (54%), Positives = 94/132 (71%)
 Frame = +1

Query: 1   DAWVLSFLEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLYECEKHPR 180
           DAW +    AEN LL GG RRK LSILK +RD H+D PG PVT Y +KTL+LYECEKH  
Sbjct: 234 DAWAMKMHGAENMLLTGG-RRKTLSILKCLRDAHMDFPGTPVTNYILKTLVLYECEKHCS 292

Query: 181 EHEWDEAAIGDRINGIFLQLISSLQCRRCPHYFLPHVDLFKGKSPTALENAAKQVWRLTR 360
           E+EW++  IGDR+ GI LQL+S LQCRRC HYFLP +DL + K   ++E++A+  W L R
Sbjct: 293 EYEWEDPNIGDRLVGILLQLVSCLQCRRCAHYFLPSLDLLRSKPVHSIEHSAQLAWHLVR 352

Query: 361 EMLTNSRAFEKL 396
           +++ +  A + L
Sbjct: 353 KLMIDPNALQSL 364


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score =  160 bits (388), Expect = 1e-39
 Identities = 72/132 (54%), Positives = 94/132 (71%)
 Frame = +1

Query: 1   DAWVLSFLEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLYECEKHPR 180
           DAW +    AEN LL GG RRK LSILK +RD H+D PG PVT Y +KTL+LYECEKH  
Sbjct: 234 DAWAMKMHGAENMLLTGG-RRKTLSILKCLRDAHMDFPGTPVTNYILKTLVLYECEKHCS 292

Query: 181 EHEWDEAAIGDRINGIFLQLISSLQCRRCPHYFLPHVDLFKGKSPTALENAAKQVWRLTR 360
           E+EW++  IGDR+ GI LQL+S LQCRRC HYFLP +DL + K   ++E++A+  W L R
Sbjct: 293 EYEWEDPNIGDRLVGILLQLVSCLQCRRCAHYFLPSLDLLRSKPVHSIEHSAQLAWHLVR 352

Query: 361 EMLTNSRAFEKL 396
           +++ +  A + L
Sbjct: 353 KLMIDPNALQSL 364


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 269 GQRRHWSEDISCRKIPLIRSPMAASSHSCSRGCFS 165
           GQ   W   ++ RK+P+ RSP+   +H+ +  C +
Sbjct: 358 GQICVWDNRLTSRKLPINRSPLTTQAHTYTVSCLA 392


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 709 LYAY*KIFQSNKY--------TVFV*IKNISITRIVQRLSYLHLYITKYNRIKSY*FY 560
           +Y   K+ + NKY         +F  +KN+ + + + ++ + +L+IT+ N  +S  FY
Sbjct: 466 IYTTKKMMEQNKYYRKRVKESNIFNLMKNVRVKKDLAKVEHSYLFITRINEFRSETFY 523


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 235 QLISSLQCRRCPHYFLPHV 291
           QL+S ++C + P+Y  PHV
Sbjct: 855 QLLSGMECNKIPYYLRPHV 873


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 374 LVSISLVSLQTCLAAFSSAVGDLPLKRSTCGRK*WGQRRHWSEDISCRKIPLIRSPMAAS 195
           ++ ISL+S++  L   SS  GD P +     +    +RR W      R++  ++  M A+
Sbjct: 780 ILLISLLSVREPLIPVSSLRGDTPEETKELMKNVLKERRRWCSHTGARRLGDLKVLMHAA 839

Query: 194 S 192
           S
Sbjct: 840 S 840


>AF026214-6|AAB71316.3|  875|Caenorhabditis elegans Hypothetical
           protein F52H2.7 protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 124 PGYPASPSGGLLLFSVCSDISADIRLAADGSPPLGNSAP 8
           P Y A P    +  SVC  IS+D    AD +  +GN+ P
Sbjct: 565 PQYYAGPRN-FIQVSVCKKISSDPNETADYASDIGNALP 602


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,204
Number of Sequences: 27780
Number of extensions: 279286
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)