Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6066
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   7.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   7.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   7.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   7.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 366 HLSGQPPNLFGRVLQRRRRLALEEVHVRQEVVGAAAALERGYQL 235
           H+ G    L G +   RR L L+ +      VGA+  +  GY L
Sbjct: 206 HVVGGLTGLIGCLTLGRRILRLDAIDEASIAVGASGNVFAGYLL 249


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   LGAEFPRGGEPSAARRMSAEMSEHTENNKRPPLGLAG*PGDVLSHED 146
           +G +  RG + S    +  E+    + NKR P+G  G  G   S +D
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPE-DINKRAPMGFQGMRGKKASFDD 104


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   LGAEFPRGGEPSAARRMSAEMSEHTENNKRPPLGLAG*PGDVLSHED 146
           +G +  RG + S    +  E+    + NKR P+G  G  G   S +D
Sbjct: 60  MGFQGVRGKKNSIINDVKNELFPE-DINKRAPMGFQGMRGKKASFDD 105


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   LGAEFPRGGEPSAARRMSAEMSEHTENNKRPPLGLAG*PGDVLSHED 146
           +G +  RG + S    +  E+    + NKR P+G  G  G   S +D
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPE-DINKRAPMGFQGMRGKKASFDD 104


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 6   LGAEFPRGGEPSAARRMSAEMSEHTENNKRPPLGLAG*PGDVLSHED 146
           +G +  RG + S    +  E+    + NKR P+G  G  G   S +D
Sbjct: 59  MGFQGVRGKKNSIINDVKNELFPE-DINKRAPMGFQGMRGKKASFDD 104


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -2

Query: 303 LEEVHVRQEVVGAAAALERGYQLQEDPVDPVADGGLVPLVLP 178
           L +++++ +++     LE  +Q  +   DP   GG+  L +P
Sbjct: 57  LIDLNLKDQILTTNVWLEHEWQDHKFQWDPAEYGGVTELYVP 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,804
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)