Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6065
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   3.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   3.0  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    26   5.2  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.1  

>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +2

Query: 407 TKKWDEFGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDDFKGLCGEE 586
           T++  EF K  Y Y    W    DP   E       +KG +G   W    +  K L G+E
Sbjct: 54  TRQPSEFEKSIYKYNAELWNELSDPLPAEFYF----KKGSVGEKDW---QERQKTLKGKE 106

Query: 587 NPLIKLLHK 613
           +P   +  K
Sbjct: 107 SPFETIFGK 115


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 578 GEENPLIKLLHKHMSTYTVPPARTGHTTPTPEWARPPST 694
           G  NPL  L     + + +P        P PE   PPST
Sbjct: 103 GANNPLANLTSARYAGFNIPMPSASMFGPNPENPVPPST 141


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 517 EGLPRGYDMGYRYGRF*GTMRRGKSLDQ 600
           E  PRG+  G R GR  G  RRG   D+
Sbjct: 3   ESAPRGFGRGGRGGRGRGRGRRGAKRDE 30


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 93  IGPVSPMCIRLYTNALTTNGPTRNLT*MMVLIYGKRRVALPIN*WSVF 236
           + P+    +  + + +  N P   LT   +  Y +R +  P+N WSV+
Sbjct: 301 LDPLDASLLLAFCHIIKNNNPDDGLTREEMAPYAERVLVYPVN-WSVY 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,380
Number of Sequences: 5004
Number of extensions: 75732
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)