Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6064
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           64   2e-11
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    57   2e-09
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   4.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.5  

>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
 Frame = +1

Query: 46  DAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRYMLKLFRDYLF----- 210
           D +E  L+++++N            +++RPE   DP WS +G  ++++LFR Y+F     
Sbjct: 479 DVYETYLAEQVENDRLLRLLLKLEFLDDRPEYVDDPDWSASGVYFVIRLFRKYMFQVQTI 538

Query: 211 ---------HSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
                     S TT  R  L++AHL  CLN+LD GT  ++ L   DE + +++S+ E++
Sbjct: 539 DDASKKPTLQSTTTPPRKLLNKAHLLSCLNKLDAGTDEQILL--EDEFTRIIMSFKEVR 595


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 28/68 (41%), Positives = 39/68 (57%)
 Frame = +1

Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
           ++ L RDYLFH +  D  P +D   + + L +LD G    + L+SRDE   + VSY ELK
Sbjct: 517 LIYLLRDYLFHQIDEDECPVIDLYQVLNRLGKLDAGINQAIALISRDELDCVSVSYGELK 576

Query: 361 HCLDQAFE 384
             LD  +E
Sbjct: 577 AWLDNVYE 584


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 LTHCLNQLDGGTAA-KVELMSRDEQSVLVVSYAELKHCLDQAFEEVMQASEPDS*LA 423
           L +C++Q DG  A   +EL+   + SV +   A     + Q FEEV + ++ D+ LA
Sbjct: 459 LLNCMDQ-DGSNAGYDIELVRLVKNSVNIPVIASSGAGIPQHFEEVFKETDCDAALA 514


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 126 RASRIESGSCLVGDRRSLHAEAVP*LSVPFSDD*RPSLAGPSAPN-ALPEPARRRNCCEG 302
           +++R+ +G+  +  RRS   E  P    P S+D     +G ++ N +LP     R+  E 
Sbjct: 23  QSARVAAGNAAINRRRSSPVENSPGNGFPVSEDATDYPSGTTSENESLPLNRAPRSLREV 82

Query: 303 GADVSRRAKRP 335
            +++++    P
Sbjct: 83  ASELAQEETLP 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,266
Number of Sequences: 5004
Number of extensions: 39265
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)