Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6064
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240...    31   0.72 
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351...    30   1.7  
10_08_0821 + 20812426-20813229                                         30   2.2  
06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681           30   2.2  
06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431     29   5.1  
03_02_0997 - 13094357-13094379,13094797-13095058                       29   5.1  
01_01_0459 + 3400288-3400729,3400760-3400806,3401055-3401141,340...    29   5.1  
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283...    28   6.7  
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985...    28   6.7  
10_07_0077 + 12645091-12646750,12647612-12648273                       28   8.9  
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948     28   8.9  
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    28   8.9  

>05_05_0092 -
           22323049-22323224,22323840-22323887,22323962-22324016,
           22324260-22324360,22324457-22324518,22324683-22324881,
           22325107-22325254,22325331-22325377,22325928-22325995,
           22326428-22326542,22326657-22326816
          Length = 392

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 214 SVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELKHCL------DQ 375
           S+  D   W DQ HL   +N + G  A    L    E    V+SY E  HC+       Q
Sbjct: 145 SIKDDNIKWSDQGHLKCRVNAIKGLIAL---LNGETESENAVLSYCEYLHCVGDFPLATQ 201

Query: 376 AFEEVMQA 399
            +E V++A
Sbjct: 202 MYERVLEA 209


>07_01_0465 +
           3513296-3513631,3514386-3514442,3515196-3515306,
           3515466-3515552,3515627-3515740,3515850-3516056,
           3516291-3516428,3516691-3516852,3516939-3517138,
           3517429-3517554,3517644-3517785
          Length = 559

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 231 PSLAGPSAPNALPEPARRRNCCEG-GADVSRRAKRPGRVLR*AEALPRPSLRGG 389
           PSL  PSA  A P    RR C  G  A VS    +       A A   P  RGG
Sbjct: 8   PSLLKPSAAAARPSALLRRRCRAGTAASVSASRSQAAAATTGAAAPAPPETRGG 61


>10_08_0821 + 20812426-20813229
          Length = 267

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/70 (30%), Positives = 26/70 (37%)
 Frame = +3

Query: 231 PSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDASLRAR 410
           P+L    +P  +P  A       GG  V+   +RP R    A        R  D   RAR
Sbjct: 14  PALLHTPSPVPIPRAAAAAAGEVGGTPVASFLRRPARFFSSAARRGPARPRATDIGARAR 73

Query: 411 FLASTERWAY 440
            L S   W Y
Sbjct: 74  QLQSRRLWTY 83


>06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681
          Length = 350

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 472 YGSGYTNSIPIRHGDDLGYVTNAYGFSFSFGYINGFSRENNV 597
           +G+GY       +G D GY+ N Y  S+S GY NG+  + N+
Sbjct: 73  HGNGYDQVYG--NGYDGGYI-NGYSHSYSNGYSNGYFHKANL 111


>06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431
          Length = 261

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 NALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDAS 398
           + LP P    NC  G + VS+  KRP  V   ++  P+P  R  DA+
Sbjct: 131 DTLPSPTGPDNCSPGTSGVSK--KRPKGVKSPSKRQPKPKSRFTDAT 175


>03_02_0997 - 13094357-13094379,13094797-13095058
          Length = 94

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 234 SLAGPSAPNALPEPARRRNC-CEGGAD 311
           +LAG   P  +P P RRR C C  G D
Sbjct: 62  ALAGSGRPRPVPSPPRRRACLCRYGRD 88


>01_01_0459 +
           3400288-3400729,3400760-3400806,3401055-3401141,
           3401230-3401561,3401648-3401807,3402155-3402223,
           3403165-3403263
          Length = 411

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 159 VGDRR-SLHAEAVP*LSVPFSDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRP 335
           VG R+ + H   +     P S+  RP+  G  A +A P P RRR      A    R +R 
Sbjct: 19  VGPRKDTAHEPMIHIRKKPTSNAPRPTQLGSHATDARPPP-RRRRLGLATASARLRRRRA 77

Query: 336 GRVLR 350
           GR  R
Sbjct: 78  GRACR 82


>06_03_0052 -
           16027570-16027617,16027789-16027795,16028103-16028341,
           16028432-16028566,16028670-16028888
          Length = 215

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +3

Query: 315 SRRAKRPGRVLR*AEALPRPSLRGGDASLRARFLAS 422
           S RA  P   L  A A P P+  GG +S RAR L S
Sbjct: 28  SARAGHPTSALVRATAPPPPATGGGGSSSRARLLQS 63


>05_06_0279 +
           26896997-26897457,26898100-26898220,26898310-26898586,
           26898735-26898895
          Length = 339

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 231 PSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLR 383
           PS +G ++   LP  A   + CE  A   R+ + PGR  R    LP P LR
Sbjct: 43  PSQSGANSSTFLPAAAG--SACEAPA---RKKRTPGRWRRIPRTLPHPCLR 88


>10_07_0077 + 12645091-12646750,12647612-12648273
          Length = 773

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 231 PSLAGPSAPNALPEPARRRNCCEGGADVS 317
           PS AG   P   P PAR +  CE G D S
Sbjct: 149 PSFAGGDLP---PPPARWKGVCEAGVDFS 174


>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
          Length = 712

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 102 INQAWHCQRASRIESGSCLVGDRRSLHAEAV 194
           I++ W C     + SG  +VGD+R   A A+
Sbjct: 250 IDKIWRCDGELLVSSGDGVVGDKRRARARAL 280


>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 228 RPSLAGPSAPNALPEPARRRNCCEGGADVSRR 323
           RPS +  S+P+  P+PA      +GG D   R
Sbjct: 153 RPSSSQASSPSLSPQPAHAAGAVDGGEDPPTR 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,299
Number of Sequences: 37544
Number of extensions: 332356
Number of successful extensions: 1064
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)