Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6064
(739 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF088216-1|ABK41888.1| 687|Homo sapiens polyA specific ribonucl... 162 1e-39
BC128180-1|AAI28181.1| 687|Homo sapiens PAN3 polyA specific rib... 162 1e-39
BC128179-1|AAI28180.1| 553|Homo sapiens PAN3 protein protein. 162 1e-39
BC024318-1|AAH24318.1| 442|Homo sapiens PAN3 protein protein. 162 1e-39
AL356915-4|CAI12450.2| 741|Homo sapiens PAN3 polyA specific rib... 162 1e-39
AL356915-3|CAI12449.2| 687|Homo sapiens PAN3 polyA specific rib... 162 1e-39
AL138712-3|CAM20921.1| 741|Homo sapiens PAN3 polyA specific rib... 162 1e-39
AL138712-2|CAI14848.1| 687|Homo sapiens PAN3 polyA specific rib... 162 1e-39
AK131556-1|BAD18690.1| 472|Homo sapiens protein ( Homo sapiens ... 162 1e-39
AB109552-1|BAD93184.1| 741|Homo sapiens PABP1-DEPENDENT POLY(A)... 159 7e-39
AB107584-1|BAD02262.1| 687|Homo sapiens PABP1-DEPENDENT POLY(A)... 159 7e-39
AK091307-1|BAC03632.1| 126|Homo sapiens protein ( Homo sapiens ... 141 2e-33
AK126810-1|BAC86703.1| 195|Homo sapiens protein ( Homo sapiens ... 31 5.7
D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscu... 30 7.5
AK126635-1|BAC86624.1| 162|Homo sapiens protein ( Homo sapiens ... 30 10.0
>EF088216-1|ABK41888.1| 687|Homo sapiens polyA specific
ribonuclease subunit homolog protein.
Length = 687
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 550 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 609
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 610 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 669
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 670 RCFENTFQELIAAA 683
>BC128180-1|AAI28181.1| 687|Homo sapiens PAN3 polyA specific
ribonuclease subunit homolog (S. cerevisiae) protein.
Length = 687
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 550 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 609
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 610 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 669
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 670 RCFENTFQELIAAA 683
>BC128179-1|AAI28180.1| 553|Homo sapiens PAN3 protein protein.
Length = 553
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 416 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 475
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 476 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 535
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 536 RCFENTFQELIAAA 549
>BC024318-1|AAH24318.1| 442|Homo sapiens PAN3 protein protein.
Length = 442
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 305 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 364
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 365 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 424
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 425 RCFENTFQELIAAA 438
>AL356915-4|CAI12450.2| 741|Homo sapiens PAN3 polyA specific
ribonuclease subunit homolog (S. cerevisiae) protein.
Length = 741
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 604 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 663
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 664 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 723
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 724 RCFENTFQELIAAA 737
>AL356915-3|CAI12449.2| 687|Homo sapiens PAN3 polyA specific
ribonuclease subunit homolog (S. cerevisiae) protein.
Length = 687
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 550 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 609
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 610 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 669
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 670 RCFENTFQELIAAA 683
>AL138712-3|CAM20921.1| 741|Homo sapiens PAN3 polyA specific
ribonuclease subunit homolog (S. cerevisiae) protein.
Length = 741
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 604 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 663
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 664 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 723
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 724 RCFENTFQELIAAA 737
>AL138712-2|CAI14848.1| 687|Homo sapiens PAN3 polyA specific
ribonuclease subunit homolog (S. cerevisiae) protein.
Length = 687
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 550 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 609
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 610 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 669
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 670 RCFENTFQELIAAA 683
>AK131556-1|BAD18690.1| 472|Homo sapiens protein ( Homo sapiens
cDNA FLJ16798 fis, clone TESTI2053667, weakly similar
to PAB-dependent poly(A)-specific ribonuclease subunit
PAN3 (EC 3.1.13.4). ).
Length = 472
Score = 162 bits (394), Expect = 1e-39
Identities = 69/134 (51%), Positives = 94/134 (70%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 335 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 394
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK
Sbjct: 395 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLK 454
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 455 RCFENTFQELIAAA 468
>AB109552-1|BAD93184.1| 741|Homo sapiens PABP1-DEPENDENT
POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3b protein.
Length = 741
Score = 159 bits (387), Expect = 7e-39
Identities = 68/134 (50%), Positives = 93/134 (69%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 604 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 663
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SR E+SVLVV+Y++LK
Sbjct: 664 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRGEKSVLVVTYSDLK 723
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 724 RCFENTFQELIAAA 737
>AB107584-1|BAD02262.1| 687|Homo sapiens PABP1-DEPENDENT
POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3 protein.
Length = 687
Score = 159 bits (387), Expect = 7e-39
Identities = 68/134 (50%), Positives = 93/134 (69%)
Frame = +1
Query: 1 GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
GARFYTQ++A + R D E+ L++E+ N +NERPE DP WSETGDRY
Sbjct: 550 GARFYTQLDAAQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRY 609
Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
+LKLFRD+LFH VT G PW+D +H+ CLN+LD G K+ L+SR E+SVLVV+Y++LK
Sbjct: 610 LLKLFRDHLFHQVTEAGAPWIDLSHIISCLNKLDAGVPEKISLISRGEKSVLVVTYSDLK 669
Query: 361 HCLDQAFEEVMQAS 402
C + F+E++ A+
Sbjct: 670 RCFENTFQELIAAA 683
>AK091307-1|BAC03632.1| 126|Homo sapiens protein ( Homo sapiens
cDNA FLJ33988 fis, clone DFNES2006346, weakly similar to
PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3
(EC ).
Length = 126
Score = 141 bits (342), Expect = 2e-33
Identities = 60/121 (49%), Positives = 82/121 (67%)
Frame = +1
Query: 40 RADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRYMLKLFRDYLFHSV 219
R D E+ L++E+ N +NE PE DP WSETGDRY+LKLFRD+LFH V
Sbjct: 2 RNDVIEEDLAKEVQNGRLFRLLAKLGTINEGPEFQKDPTWSETGDRYLLKLFRDHLFHQV 61
Query: 220 TTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELKHCLDQAFEEVMQA 399
T G PW+D +H+ CLN+LD G K+ L+SRDE+SVLVV+Y++LK C + F+E++ A
Sbjct: 62 TEAGAPWIDLSHIISCLNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAA 121
Query: 400 S 402
+
Sbjct: 122 A 122
>AK126810-1|BAC86703.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ44860 fis, clone BRALZ2007661. ).
Length = 195
Score = 30.7 bits (66), Expect = 5.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 237 LAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSL 380
L+ P P + P P + R R RP R+LR ALPR L
Sbjct: 107 LSQPPGPTSPPRPQKGRRAQSPWGFPKARVPRPSRLLRYPMALPRKGL 154
>D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscular
dystrophy protein.
Length = 853
Score = 30.3 bits (65), Expect = 7.5
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Frame = +3
Query: 252 APNALPEPARRRNCCEGGA--DVSRRAKRPGRV-----LR*AEALPRPSLRGGDASL--R 404
AP AL P R C+ G +S +P + R E++ RPS RGG +SL R
Sbjct: 188 APGALRHPETCREGCKPGMVPSLSLPGSKPATLQTPPRCRTRESIVRPSRRGGISSLGSR 247
Query: 405 ARFLASTERWAYVC 446
+ L ER + C
Sbjct: 248 SGLLRGNEREPHAC 261
>AK126635-1|BAC86624.1| 162|Homo sapiens protein ( Homo sapiens
cDNA FLJ44677 fis, clone BRACE3009265. ).
Length = 162
Score = 29.9 bits (64), Expect = 10.0
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 207 VPFSDD*RPSLA-GPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLR 383
+P S+D PS A GP+A A+P P RRR A GR + A + P R
Sbjct: 13 LPGSEDGAPSPAVGPAAKAAVPCPCRRRRGWRWWPPAGTPAAAAGRTVEGAGSDRDPKGR 72
Query: 384 GGDASLRAR 410
A AR
Sbjct: 73 TASAPQHAR 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,786,776
Number of Sequences: 237096
Number of extensions: 1633571
Number of successful extensions: 4527
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4527
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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