Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6064
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical p...   140   1e-33
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    34   0.091
Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical
           protein ZK632.7 protein.
          Length = 632

 Score =  140 bits (338), Expect = 1e-33
 Identities = 60/131 (45%), Positives = 87/131 (66%)
 Frame = +1

Query: 1   GARFYTQVEALERRADAFEDQLSQEIDNXXXXXXXXXXXXVNERPELNLDPAWSETGDRY 180
           G RF+T +E ++ + D  E +LS+E++N            V ER E   D AWSETGDR+
Sbjct: 494 GGRFFTVMENMQAKTDVLEAELSREMENGRLFRLVAKMNTVLERVEHGTDDAWSETGDRF 553

Query: 181 MLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAELK 360
           MLKLFRDY+FH VT  G+ WLD AH+  CLN+LD G+  K+E++SR   + +++ YA LK
Sbjct: 554 MLKLFRDYVFHQVTDQGKAWLDMAHIVQCLNKLDCGSQEKIEMVSRSGDTQIIIDYATLK 613

Query: 361 HCLDQAFEEVM 393
            CLD++F +++
Sbjct: 614 RCLDKSFRDLL 624


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 216 SDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDA 395
           SDD +   A P+  NA P+P  ++   E  +D S   K+P      A+A P+P+ +  D 
Sbjct: 500 SDDEKKPAAKPTPANATPKPVAKK--AESSSDSSDDEKKPVAKPTSAKATPKPAAKKADL 557

Query: 396 S 398
           S
Sbjct: 558 S 558



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 216 SDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDA 395
           SDD +   A P+   A P+P  ++   E  +D S   K+P      A+A P+P+ +  D+
Sbjct: 378 SDDEKKPAAKPTPAKATPKPVAKK--AESSSDSSDDEKKPVAKPTSAKATPKPAAKKADS 435

Query: 396 S 398
           S
Sbjct: 436 S 436



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 216 SDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDA 395
           SDD +  +A P+   A P+P  ++   E  +D S   K+P      A+A P+P  +  ++
Sbjct: 347 SDDEKKPVAKPAPAKATPKPVAKK--AESSSDSSDDEKKPAAKPTPAKATPKPVAKKAES 404

Query: 396 S 398
           S
Sbjct: 405 S 405



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 216 SDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDA 395
           SDD +   A P+     P+P  ++   E  +D S   K+P      A+A P+P+ +  D+
Sbjct: 225 SDDEKKPAAKPTPAKPTPKPVVKK--AESSSDSSDDEKKPVAKPAPAKATPKPAAKKADS 282

Query: 396 S 398
           S
Sbjct: 283 S 283


>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 216 SDD*RPSLAGPSAPNALPEPARRRNCCEGGADVSRRAKRPGRVLR*AEALPRPSLRGGDA 395
           SDD +   A P+     P+P  ++   E  +D S   K+P      A+A P+P+ +  D 
Sbjct: 225 SDDEKKPAAKPTPAKPTPKPVVKK--AESSSDSSDDEKKPVAKPTSAKATPKPAAKKADL 282

Query: 396 S 398
           S
Sbjct: 283 S 283


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 365 QCFSSA*DTTRTLCSSRDISSTFAAVPPSSWFRQCVRCAWSSQGRPSVVTE 213
           +C S+  DT R+ CS+R   ST  A   ++    C   + S QG P + T+
Sbjct: 162 KCMSTCSDTCRSSCSNRVSQSTCDATCQNTCSSMCP--SQSPQGSPQLPTQ 210


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 472 YGSGYTNSIPIRHGDDLGYVTNAYGFSFSFGYINGFS 582
           YG+GY N     +G+  GY  N YG  +  GY N ++
Sbjct: 130 YGNGYNNGY---YGN--GYYGNGYGNGYGNGYYNQYN 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,971
Number of Sequences: 27780
Number of extensions: 240287
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)