Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6062
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   9.5  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   9.5  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   9.5  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   9.5  

>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 134 HYGGWFQFSRRSPSTLPSGG 75
           H+GG+ Q++R S S  PSGG
Sbjct: 632 HHGGYHQYNRPSTSGPPSGG 651


>Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical
           protein F58H1.3a protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 663 LSIPLRCVLRIAYLRSIRIKSNKSSLMESMLIK 761
           L++   C++R+  LR IRI  NK+   + M I+
Sbjct: 386 LAVVFACLIRVQQLRLIRIYQNKNDAEQFMAIR 418


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 15   STPTKRTVAKHKDKLDTPPATTTRKGRRTSARELK 119
            ++PTK+T  + K   +  PA+ T+K +  +A E+K
Sbjct: 1394 ASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVK 1428


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 15   STPTKRTVAKHKDKLDTPPATTTRKGRRTSARELK 119
            ++PTK+T  + K   +  PA+ T+K +  +A E+K
Sbjct: 1394 ASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVK 1428


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 15   STPTKRTVAKHKDKLDTPPATTTRKGRRTSARELK 119
            ++PTK+T  + K   +  PA+ T+K +  +A E+K
Sbjct: 1394 ASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVK 1428


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 15   STPTKRTVAKHKDKLDTPPATTTRKGRRTSARELK 119
            ++PTK+T  + K   +  PA+ T+K +  +A E+K
Sbjct: 1394 ASPTKKTGEEVKSPKEKSPASPTKKEKSPAAEEVK 1428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,049
Number of Sequences: 27780
Number of extensions: 256762
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)