Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6061
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   2.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.7  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    24   8.1  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    24   8.1  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   8.1  

>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 GRVGRPRPLTNALMLVVMCGGVGS 382
           G  G  R L N+ ++VV CGGVGS
Sbjct: 117 GEDGMER-LRNSFVIVVGCGGVGS 139


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 272 VAPEWYPVPIGSR 310
           +AP+W+ VP+G+R
Sbjct: 376 LAPKWFKVPVGAR 388


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 135 LAPIHTYRLGKGFACACITMLF 70
           L  ++TY  GKG +C  +  LF
Sbjct: 187 LQQVYTYYTGKGLSCIIVHRLF 208


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 138 RLAPIHTYRLGKGFACACIT 79
           RLAPI  Y  GKG + A +T
Sbjct: 387 RLAPIAVYTSGKGSSAAGLT 406


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 402 HRWPAPREPTPPHITTNISALVNGRGLPTRPREP 301
           +R+P P E +PP +   + + +     P  P+EP
Sbjct: 275 NRFPFPPEGSPPPMPIELLSYIINMPPPLLPQEP 308


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 404 RTDGPRPGNPLPHT 363
           ++DG R GNPLP T
Sbjct: 702 KSDGDRNGNPLPGT 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,301
Number of Sequences: 5004
Number of extensions: 34407
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)