Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6061
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 31 0.28
07_01_0244 + 1786009-1788048 31 0.48
06_01_0802 - 6018454-6018525,6018632-6018703,6018792-6018896,602... 29 1.1
01_05_0124 - 18380313-18380518,18380532-18380895 29 1.1
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 29 1.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 28 2.6
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 28 3.4
12_01_0454 + 3580332-3581714 27 4.5
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615 27 5.9
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 27 5.9
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 31.5 bits (68), Expect = 0.28
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 391 RAQGTHSPTHNNQH*RISQRTRPPDPPSGTNRHRVPLRRY 272
R G+H P H H R+RPP PP + R P RR+
Sbjct: 33 RRHGSHGPGHYGNH--HHHRSRPPPPPPPPSEFR-PFRRW 69
>07_01_0244 + 1786009-1788048
Length = 679
Score = 30.7 bits (66), Expect = 0.48
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 284 WYPVPIGSRGRVGRPRPLTNALMLVVMCGGVGSLGAG 394
+YP PI + G R T+ + V C G GS G G
Sbjct: 64 FYPYPIPLQYTGGETRSFTSTFVFAVTCSGSGSCGDG 100
>06_01_0802 -
6018454-6018525,6018632-6018703,6018792-6018896,
6020263-6020546,6020655-6020793
Length = 223
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 399 RWPAPREPTPPHITTNISALVNGRGLPTR 313
R+P PR +PP+ + AL + R LPTR
Sbjct: 18 RFPLPRGRSPPYAAAAVPALRSRRCLPTR 46
>01_05_0124 - 18380313-18380518,18380532-18380895
Length = 189
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 295 ADWFPRAGREASSVD*CANVGCYVWGSGFPGRGPSVRG 408
A W P + A SV A + C +WG F G GP+ G
Sbjct: 111 ARWRPARNQAAGSVG--APLQCLLWGEMFMGLGPTALG 146
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 399 RWPAPREPTPPHITTNISALVNGRGLPTRPREPIGTGYHSG 277
+WP P++PTPP +A+ GR L RP E + Y G
Sbjct: 32 QWPRPQQPTPPPAAAPDAAM--GRVL-GRPMEDVRATYTFG 69
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 283 VVPGA-DWFPRAGREASSVD*CANVGCYV-WGS 375
V+PG+ D FP + S VD C+N CYV W S
Sbjct: 344 VMPGSQDSFPSSDIYDSGVDDCSNPKCYVMWPS 376
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 149 TLIGATDARNQLGRHDRYTHNHQ 217
T+ GA A+ L RHDR THNH+
Sbjct: 390 TIRGARKAK-MLRRHDRRTHNHR 411
>12_01_0454 + 3580332-3581714
Length = 460
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 376 HSPTHNNQH*RISQRTRPPDPPSGTNRHRVPLRRY 272
H H +++ + +PP PP G + P RRY
Sbjct: 242 HMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRY 276
>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
Length = 390
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 373 SPTHNNQH*RISQRTRPPDPPS 308
+PTH + H R S RP PPS
Sbjct: 43 TPTHRHHHHRRSPSPRPATPPS 64
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 410 TPRTDGPRPGNPLPHT-*QPTLAH*STDEASRPALGNQSAPGTTQALRYI 264
+P T P P +P+P T +PTL S AS P+ + SA ++ +L ++
Sbjct: 31 SPSTSTPPPPSPIPSTSPRPTLRSSSLPPASTPS-PSSSASSSSGSLHHL 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,894
Number of Sequences: 37544
Number of extensions: 306503
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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