Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6061
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28412-3|AAC46594.2|   92|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen prot...    28   3.1  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    27   7.1  
AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U28412-3|AAC46594.2|   92|Caenorhabditis elegans Hypothetical
           protein T19C3.3 protein.
          Length = 92

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 394 ARAQGTHSPTHNNQH*RISQRTRPPDPPSGTNRHRV-PLRRYVTLSDSYGLTNALSIRTS 218
           A A  TH+P   ++H     R    DPP+  +  RV P  +     D     +    RT 
Sbjct: 10  APAPPTHAPLTPHKHCNTRDRLFGQDPPAVASPKRVTPTFKSQIFDDVPASPSRTPKRTV 69

Query: 217 LVVMRVPIVTSQLVPS 170
            VV R P VT ++ PS
Sbjct: 70  QVVSRNP-VTGEIKPS 84


>AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen protein
           115 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 266 CNVAPEWYPVPIGSRGRVGRPRP 334
           C  AP+ YP P G +GR G   P
Sbjct: 238 CAPAPQGYPGPPGPKGRTGEQGP 260


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 370 PTHNNQH*RISQRTRPPDPPS 308
           PTH+ QH  ++Q   PP  PS
Sbjct: 810 PTHSQQHHHVAQPAAPPSLPS 830


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 370 PTHNNQH*RISQRTRPPDPPS 308
           PTH+ QH  ++Q   PP  PS
Sbjct: 810 PTHSQQHHHVAQPAAPPSLPS 830


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 403  APMARAQGTHSPTHNNQH*RISQRTRPPDPPSGTNR 296
            AP   +Q T  PT+ N   +  ++  PP PP G  R
Sbjct: 1344 APPPPSQPTRLPTYTNAISQQQRQFEPPRPPRGNMR 1379


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 8   ARGLSLHCNCAVCRDM-FLTFVNSIVMHAHAKPLPNLYVCIGAKR*TLTLIGATDARNQL 184
           A G++ H +    R+  FL F N I+M    K + ++   +  K+    +IG       L
Sbjct: 277 AGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIGVIVEEISL 336

Query: 185 GRHDRYTHNHQRCSY 229
              D+  H   +C Y
Sbjct: 337 WCIDQSLHEINKCLY 351


>AC006772-3|AAF60608.1|   85|Caenorhabditis elegans Hypothetical
           protein Y46D2A.3 protein.
          Length = 85

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 363 CVGEWVPWARAIGARC 410
           C G W PW    GA C
Sbjct: 7   CPGTWTPWINVKGAMC 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,245,603
Number of Sequences: 27780
Number of extensions: 221196
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)