Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6061
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 411 HTSHRWPAPREPTPPHITT 355
           HT H  P P E   P + T
Sbjct: 461 HTPHHHPHPPETPGPQVET 479


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 298 RHRVPLRRYVTLSDSYGLTNALSIRTSLVVM 206
           RH+  +R    + D+YG+   L + T+ + +
Sbjct: 109 RHKHIVRLVTAIGDAYGVALLLHMLTTTITL 139


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 185 GRHDRYTHNHQRCSY 229
           G+HD    NHQ  SY
Sbjct: 179 GKHDYRVWNHQLISY 193


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = -1

Query: 231 QYEHRWW 211
           +Y+H WW
Sbjct: 160 EYDHTWW 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,789
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)