Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6060
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 287 4e-78
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 287 4e-78
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 111 6e-25
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.4
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.7
U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical p... 28 7.5
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 28 7.5
Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical p... 27 9.9
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 27 9.9
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 27 9.9
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 9.9
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 9.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 287 bits (705), Expect = 4e-78
Identities = 128/210 (60%), Positives = 161/210 (76%), Gaps = 1/210 (0%)
Frame = +2
Query: 83 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 262
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 263 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 439
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 440 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 619
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 620 LEADWDFLPPKKIKDPEAKKPEDWDDKPTI 709
LE DWD LP KKIKDP+AKKPEDWD++ I
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYI 220
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 629 DWDFLPPKKIKDPEAKKPEDWDDK 700
DW+ P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 287 bits (705), Expect = 4e-78
Identities = 128/210 (60%), Positives = 161/210 (76%), Gaps = 1/210 (0%)
Frame = +2
Query: 83 INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 262
++ +V+F+E+F D SWE WV S+H +FG FKL+AGKFF D+G++TS+DA+FY+
Sbjct: 13 VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
Query: 263 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 439
+ KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV + D HGETPY +MFGPD
Sbjct: 72 RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131
Query: 440 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 619
ICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+ DNTYEV ID E ++G
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190
Query: 620 LEADWDFLPPKKIKDPEAKKPEDWDDKPTI 709
LE DWD LP KKIKDP+AKKPEDWD++ I
Sbjct: 191 LEEDWDLLPAKKIKDPDAKKPEDWDEREYI 220
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 629 DWDFLPPKKIKDPEAKKPEDWDDK 700
DW+ P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 111 bits (266), Expect = 6e-25
Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Frame = +2
Query: 215 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 385
E D GL AR +A++ K PF+ + VVQ+ +K E+ +CGGGYLK+ +
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166
Query: 386 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 535
+ + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 536 YTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDWDDKPTI 709
THL+TL+VKP Y V +D + + G++ +D PPK+I D KP DWD++ I
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENI 285
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2
Query: 560 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDD 697
VKPD+ E + E+ DW+ + I DPEAKKP+DWD+
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDE 336
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 593 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDK 700
+N + ES DWD P+ + D A KP DW+++
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEE 318
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 491 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 613
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 491 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 613
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 536 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 649
+TH +TL VKP N Y+ DN+ ++ E F P
Sbjct: 23 HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61
>U58751-10|AAB00661.1| 205|Caenorhabditis elegans Hypothetical
protein C07G1.7 protein.
Length = 205
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 370 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 248
D E + +L D ++DY+ F + E+F G+S+ R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 563 KPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 703
+PD+ Y+ + + +G+ + D + + PKK + E K + +KP
Sbjct: 497 EPDDEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKNKREKKEKP 543
>Z75955-12|CAB00115.2| 485|Caenorhabditis elegans Hypothetical
protein R07B7.6 protein.
Length = 485
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 607 NFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIF-FDEMVLTLVTEDYVYLLGSRTTNVRA 431
N +IV++ F+ + F ++ + + + D + DEM++ + E+Y+ L G +N
Sbjct: 318 NEVIVSKVFVKSM-FEKLNMDIIIKLFDDNDYYGVDEMLVQTLYENYLGLEGQMESNCTR 376
Query: 430 EHNLIWSLSVH 398
HN I + H
Sbjct: 377 NHNDILTRMTH 387
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 538 VDIIFAADIFFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIW 413
+D+I A+D+FFD + + + LL ++ EH IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -2
Query: 321 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 145
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302
Query: 144 TQLLSHESSGNFSSKNTSQFIE 79
T + S +SS N +++ S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -2
Query: 321 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 145
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399
Query: 144 TQLLSHESSGNFSSKNTSQFIE 79
T + S +SS N +++ S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -2
Query: 321 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 145
+++T + LPS + R +AS E+F+ +SSS S +N + ++N +S +
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523
Query: 144 TQLLSHESSGNFSSKNTSQFIE 79
T + S +SS N +++ S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,843
Number of Sequences: 27780
Number of extensions: 410115
Number of successful extensions: 1367
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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