Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6058
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 31 0.80
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 30 1.9
06_03_0570 - 22363197-22363588,22363755-22366782 29 3.2
10_08_0247 - 16151969-16152091,16152599-16152718,16153480-161535... 29 4.3
06_03_0365 + 19918003-19918401 29 5.7
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 29 5.7
01_06_0753 - 31711300-31713066 29 5.7
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 28 9.9
02_05_0009 + 24942361-24943842 28 9.9
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 13 IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAI 174
+ D Q I +V +NI +GG+ + + G+SAGA + K ++I
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIAACALIEQAVKESSGQSI 247
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 13 IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGA 114
++D Q I +V +NI +GG+ + + G+SAGA
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGA 235
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = +1
Query: 343 NSLQKVLETSNNLFGLVIEKEFPGVEAVISEPFINILTSGRTANIPILVGTTSLEYACER 522
+SLQ + NN FG + P + + S F+ + + + +IP +G ++ Y+
Sbjct: 274 SSLQAINLAENNFFGSI-----PPLSDLSSIQFLYLSYNNLSGSIPSSLGNSTSLYSLLL 328
Query: 523 KSDDLQELIPADLNIDRNSEEALAIVEEIKKLYFKGNH-TGVESLPEY 663
++LQ IP+ +L+ + +++L F GN+ TG LP Y
Sbjct: 329 AWNELQGSIPS----------SLSRIPYLEELEFTGNNLTGTVPLPLY 366
>10_08_0247 -
16151969-16152091,16152599-16152718,16153480-16153545,
16153663-16153711,16154048-16154185,16154291-16154377,
16155658-16155758,16155847-16155957,16156606-16157025,
16157819-16157983,16158863-16158994,16159189-16159233
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 460 GRTANIPILVGTTSLEYACERKSDDLQELIPADLNIDRNSE--EALAIVEEIKKLYFKGN 633
G ++ IL+ + + + L DL+ + +E EA ++ +K L + N
Sbjct: 386 GLLKHLEILIANNNRITSLPSSIGGCESLNEVDLSSNLLAELPEAFGNLQHLKALSVRNN 445
Query: 634 HTGVESLPEYFHLLSDKLINLDTH 705
G+ SLP F + +LI LD H
Sbjct: 446 --GLTSLPSAFFIKCSQLITLDLH 467
>06_03_0365 + 19918003-19918401
Length = 132
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/32 (40%), Positives = 25/32 (78%), Gaps = 3/32 (9%)
Frame = -2
Query: 176 IIALLIKFLVNGLAV---SNETARAPALSPNI 90
++A+L+ LV+ L+V +++ ARAPAL+P++
Sbjct: 9 LVAVLLLLLVSSLSVRAEADQVARAPALAPDV 40
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -2
Query: 662 YSGRLSTPVWFPLKYNFFISSTIAKASSEFLSMFRSAGINS*RSSDFLSQAY 507
YS R+S+ +W ++ +F + + + F+ + +S RSS +AY
Sbjct: 773 YSSRISSQIWNEMQTDFLPNFILCNTTQRFVRSLKGTHHSSQRSSASTGKAY 824
>01_06_0753 - 31711300-31713066
Length = 588
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 132 QQRNRTRARAFTKYCQITGITTEVMDIIFHPSNGLNYIFD-TSIP 1
Q+ N+ + TKY + G T V + + + SNGL + D T+IP
Sbjct: 535 QRLNKFQKLWLTKYSDLVGHLTRVAECMTYLSNGLQRLKDSTTIP 579
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 27.9 bits (59), Expect = 9.9
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +1
Query: 115 RAVSLLTASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEI-LE 291
RA L +ASPL+ IS + S + +A ++ PL++ + ++ E + D + +E
Sbjct: 306 RAKILHSASPLSVVSISPSKKNSSDQKIRKAVRKQPLKATQPISTQPDKEESNKDGLFVE 365
Query: 292 FLIATPAKDLVEADEKLNSLQKVLETSNNLFGLVIEKEFPGVEAV-ISEPFINILTSGRT 468
+ PAK +EK + VLE ++N F ++ E G + I I + R
Sbjct: 366 PICTIPAK----KEEK--QIDIVLENTSN-FRKQMKLEHTGTNIMDIEHSSIQVTQGERY 418
Query: 469 ANIP 480
N P
Sbjct: 419 MNTP 422
>02_05_0009 + 24942361-24943842
Length = 493
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 595 IVEEIKKLYFKG-NHTGVESLPEYFHLLSDKL 687
+V+E + L++K NH G++ +PE++ L+ D L
Sbjct: 353 LVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLL 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,678
Number of Sequences: 37544
Number of extensions: 381811
Number of successful extensions: 1171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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