Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6057
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   4.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   6.2  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.2  
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    25   8.2  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLL 417
           DS+E++P  + P IK  + PG L++LL
Sbjct: 122 DSEEIIPKVYLPLIKKFW-PGPLSILL 147


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 504 PNPSLATKGSTSKLTHRHGPLSFSPD--LLRGPRFRSRGRFCEALLFASSHKVLRSN 668
           PN +L T  +T KL      L  SPD  LLRG + R+       ++F      L  N
Sbjct: 332 PNNNLYTFDATLKLLPSDRELPLSPDQLLLRGAQLRNTPWVYGIVVFTGHESKLMKN 388


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 598 VSDPAVDSAKHCSSHHPIRYFVP 666
           +SDP  ++  HCSS++ I+Y  P
Sbjct: 67  ISDPK-EAQNHCSSYYYIKYRTP 88


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 657 VPYGMMRRAVLRRIYRGIGNAAHGEDPARNSVGRVYGLIYSSIPLSQATGSA 502
           +P+G +    + R YR +G A      ++ ++  VYG  Y S+ + ++  +A
Sbjct: 68  IPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAA 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,160
Number of Sequences: 5004
Number of extensions: 55356
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)