Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6054
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   192   2e-50
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   188   4e-49
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   166   1e-42
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   150   1e-37
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   106   2e-24
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    69   2e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    52   4e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    33   0.018
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.39 
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    28   0.51 
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    27   1.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   2.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   3.6  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   4.8  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   6.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.3  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    24   8.4  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  192 bits (468), Expect = 2e-50
 Identities = 87/109 (79%), Positives = 98/109 (89%)
 Frame = +2

Query: 92  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNN 271
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDT RLIGDAAKNQVAMNP+N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 272 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
           TIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S  GKP ++V YKGE KTF
Sbjct: 64  TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTF 112


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  188 bits (457), Expect = 4e-49
 Identities = 85/109 (77%), Positives = 96/109 (88%)
 Frame = +2

Query: 92  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNN 271
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDT RLIGDAAKNQVAMNP+N
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63

Query: 272 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
           TIFDAKRLIGR+F D  VQ+DMKHWPF+V+   GKP I+V +KGE KTF
Sbjct: 64  TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTF 112


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  166 bits (403), Expect = 1e-42
 Identities = 74/109 (67%), Positives = 88/109 (80%)
 Frame = +2

Query: 92  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNN 271
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+T RL+GDAAKNQ AMNP N
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67

Query: 272 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
           T+FDAKRLIGR++ED   Q D+KHWPF+V+ + G P I+V Y GE K F
Sbjct: 68  TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQF 116


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  150 bits (363), Expect = 1e-37
 Identities = 67/108 (62%), Positives = 85/108 (78%)
 Frame = +2

Query: 95  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNNT 274
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+  RL+G+AAKNQ   NP NT
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97

Query: 275 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
           IFD KRLIGRKF++ T+  D+K +PF +V+D  +P ++V   G+ K F
Sbjct: 98  IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKF 145


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  106 bits (254), Expect = 2e-24
 Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = +2

Query: 83  KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTG-RLIGDAAKNQVAM 259
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT  G RL+G +AK Q  +
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108

Query: 260 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVV 361
           NP NT F  KRLIGR+F++  VQ D+K  P+++V
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIV 142


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
 Frame = +2

Query: 80  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAM 259
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++ +  R +G+AAK+  A 
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62

Query: 260 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
           N  NT+   KRL GR ++D  ++  +      ++    G    KV Y  E+  F
Sbjct: 63  NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAF 116


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 25/107 (23%), Positives = 57/107 (53%)
 Frame = +2

Query: 95  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNNT 274
           +GI  G   S +   + GK +++AN++GNR  PS +++       G  A+ Q+  N +N+
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86

Query: 275 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKT 415
           + + + L+G+  ++ T+     H+    V+  G+   K+  + ++++
Sbjct: 87  VTNFRDLLGKSHDELTLH--HCHYSANPVNVEGQIGFKITVQEDEES 131


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 33.1 bits (72), Expect = 0.018
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 95  VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTGRLIGDAAKNQVAMNPNN 271
           + ID GT ++   + + G  +EI+      R   S VAF    R+ G  A N     P +
Sbjct: 25  LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84

Query: 272 TIFDAKRLIGRK-FEDATVQADMKHWP 349
           +I + K L+     E   VQ     +P
Sbjct: 85  SIRNVKELLDTAGLESVLVQKYQSSYP 111


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 87  HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 182
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +2

Query: 158 IIANDQGNRTTPSY-VAFTDTGRLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQAD 334
           +IA D+ N    ++ +A + +G L+ + +     +N   T+F  ++++GR + + T Q  
Sbjct: 281 LIAGDRSNVNVIAHELAHSWSGNLVTNESWQCFWLNEGMTVFLERKILGRLYGEPTRQ-- 338

Query: 335 MKHWPFEVVSDGGKPKIKVAYKGEDKTF 418
                FE +   G+ +  V   GED  +
Sbjct: 339 -----FEAIIGWGELEESVKLLGEDSEY 361


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 200 VAFTDTGRLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 379
           + F+D     GD A     + P   +  AK L+G+  +   +  D    P++V+ D   P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184

Query: 380 KIKVAYKGEDKTF 418
            +K+   G  + F
Sbjct: 185 -LKLMIDGTVRNF 196


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 173 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 15
           G W  SP S +  H   ++++  +F +RVL   C+      L  K  +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 73  QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 252
           +NGK T +R +S     + W  P++E    R   G  D +    V R   +  +  +EP 
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531

Query: 253 GDEPQQ 270
            ++P++
Sbjct: 532 -EKPEE 536


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 403 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 281
           T I  L   + S+TDN+ER  + +G  + I  +TS   F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 373 ASITDNLERPVLHVGLHSS 317
           A +  NL RP+ H  LHSS
Sbjct: 408 APVIRNLPRPIYHQDLHSS 426


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 98   GIDLGTTYSCVGVFQHGKVEIIANDQGNR 184
            G  LG TY+   V Q G VE+   D  N+
Sbjct: 1279 GCFLGNTYAFASVTQDGSVEVHRLDVNNQ 1307


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 318 ASSNLRPMRRLASNIVLLGFIATWFLAASPMRRP 217
           A +NLR +      I+LLG+I TW L    +  P
Sbjct: 12  ALNNLRIVIFFDILIILLGYIGTWNLKTLQLVNP 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,434
Number of Sequences: 5004
Number of extensions: 36992
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)