Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6053
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   3.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.4  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    26   4.5  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   6.0  
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    25   7.9  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   7.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.9  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 372 VNVINVNLHFNHNMYFVRNYYTLDRLLKLTVLPMYNCKFLRNFALT 235
           ++VI ++  F+ N+  V   Y +    K     MYNCK L++ ++T
Sbjct: 370 LSVILLSGSFSRNLERVHLSYCIGLTAKSVSYLMYNCKTLKHLSVT 415


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -1

Query: 269 TIVNFLEISH*HISTNKLKEILLFPLNNFTCHDFCLRSVSSATKELEIVFSKHPNYYNLF 90
           T+    E++  ++  + + E+    L NF C    + + +S TK+LEI    H N+    
Sbjct: 96  TVSKLAELNQ-YVPVSVVDELSTEYLKNFKC---VVVTETSLTKQLEINDFTHKNHIAYI 151

Query: 89  SLDNIGVF 66
           + D+ G+F
Sbjct: 152 AADSRGLF 159


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 191 NNFTCHDFCLRSVSSATKELEIVFSKHP-NYYNLFSLDNIGVF 66
           N F C D   R+ SS + +  +VFS +P +   L SL+ +  F
Sbjct: 345 NAFNCIDMLPRATSSWSTKNSLVFSSNPISNQRLSSLNRVASF 387


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 143 TKELEIVFSKHPNYYNLF 90
           T + E VF  HP+Y NLF
Sbjct: 334 TADAEFVFDYHPDYENLF 351


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 578 YSRKILKKKLHIYNANIST 634
           +SRK  K KLH+ N NIS+
Sbjct: 715 FSRKTSKLKLHLSNINISS 733


>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = -1

Query: 194 LNNFTCHDFCLRSVSSATKELEIVFSKHPNYYNLFS 87
           L    C D CL     A   L+      PNY    S
Sbjct: 199 LTGMACADICLLRPEEALSSLKTALDSQPNYEEALS 234


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 218 LKEILLFPLNNFTCHDFCLRSVSSATKE 135
           L   L FPL  FTC    +R VS +T E
Sbjct: 448 LLPFLTFPLVMFTCSRKVMRVVSDSTNE 475


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 179 CHDFCLRSVSSATKELEIVFSKHPNYYNL 93
           CHD CL S    T  L  +    P ++NL
Sbjct: 110 CHDDCLSSSPPCTSALTEITLLPPTFHNL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,239
Number of Sequences: 5004
Number of extensions: 35164
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)