Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6053
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49946-5|AAX55699.1|  919|Caenorhabditis elegans Diacylglycerol ...    29   4.3  
U49946-4|AAC48135.1|  952|Caenorhabditis elegans Diacylglycerol ...    29   4.3  
U49946-3|AAX55698.1|  796|Caenorhabditis elegans Diacylglycerol ...    29   4.3  
U49946-2|AAC48134.1|  950|Caenorhabditis elegans Diacylglycerol ...    29   4.3  
U49946-1|AAX55697.1|  794|Caenorhabditis elegans Diacylglycerol ...    29   4.3  
AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a prote...    28   7.4  

>U49946-5|AAX55699.1|  919|Caenorhabditis elegans Diacylglycerol
           kinase protein 1,isoform e protein.
          Length = 919

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 NFTCHDFCLRSVSSATKELEIVFSKHP 108
           NF CH+ CLR+V S    + +   K+P
Sbjct: 55  NFVCHEKCLRTVVSYCSSVALQLIKNP 81


>U49946-4|AAC48135.1|  952|Caenorhabditis elegans Diacylglycerol
           kinase protein 1,isoform b protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 NFTCHDFCLRSVSSATKELEIVFSKHP 108
           NF CH+ CLR+V S    + +   K+P
Sbjct: 55  NFVCHEKCLRTVVSYCSSVALQLIKNP 81


>U49946-3|AAX55698.1|  796|Caenorhabditis elegans Diacylglycerol
           kinase protein 1,isoform d protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 NFTCHDFCLRSVSSATKELEIVFSKHP 108
           NF CH+ CLR+V S    + +   K+P
Sbjct: 55  NFVCHEKCLRTVVSYCSSVALQLIKNP 81


>U49946-2|AAC48134.1|  950|Caenorhabditis elegans Diacylglycerol
           kinase protein 1,isoform a protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 NFTCHDFCLRSVSSATKELEIVFSKHP 108
           NF CH+ CLR+V S    + +   K+P
Sbjct: 55  NFVCHEKCLRTVVSYCSSVALQLIKNP 81


>U49946-1|AAX55697.1|  794|Caenorhabditis elegans Diacylglycerol
           kinase protein 1,isoform c protein.
          Length = 794

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 188 NFTCHDFCLRSVSSATKELEIVFSKHP 108
           NF CH+ CLR+V S    + +   K+P
Sbjct: 55  NFVCHEKCLRTVVSYCSSVALQLIKNP 81


>AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a protein
           protein 31 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 372 VNVIN--VNLHFNHNMYFVRNYYTLDRLLKLTVLPMYNCKFLRNFAL 238
           VNV+   VN+H +       N+++ D +L   +LP++NCK L+  +L
Sbjct: 130 VNVLKEEVNIHVDT---ITLNHFSFDDVL--LILPLFNCKTLKKISL 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,660
Number of Sequences: 27780
Number of extensions: 186181
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)