Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6052
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    28   1.4  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    27   2.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.3  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   10.0 
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    25   10.0 

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 PNDFVLGIPSSFQEFHLFLFLNLVAGSRRG 336
           PN F+L +P SF    L LF+ + AGS  G
Sbjct: 150 PNIFILLVPKSFDTSMLNLFVAVSAGSLLG 179


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 213 IQARRSKRSQLPKRFRVRHPQLFPGISPFSFPQPSRW*PKR 335
           ++A  S  S+  ++ R   P+ F   +P + P P RW PKR
Sbjct: 505 VEANSSNSSKKTRKRRKPTPKSF---NPKATPDPQRWIPKR 542


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 519 EDPIRHV*DYIDFALPHHLRGL 584
           EDP+ HV D  ++ +P+H R L
Sbjct: 215 EDPLNHVLDIREYDVPYHSRTL 236


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 199 WLVLLFRQDGARGHSCPNDFVLGIPSSFQEFHLFLFLNLVAGS 327
           W++LLFR+DG        D  L     +  + LF+ L L+ G+
Sbjct: 7   WVILLFRRDGDDDDDDGQDPAL--QELYSSWALFILLVLLIGA 47


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 423 NLPPGRNRDPLRRSGENSDQ*LESLKAPRVD 515
           ++ PG +RDPL    E+ D  + S K PR++
Sbjct: 16  SIAPGHSRDPLNAIQEHMDSMILS-KLPRIN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,980
Number of Sequences: 5004
Number of extensions: 52398
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)