Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6052
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0290 + 29016410-29018920                                         29   3.4  
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    29   4.5  
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162           28   7.8  

>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 464 GSSQWVAIPTRWKIRRSTALAKASVRNLLRLSP 366
           G+S W A+ T   I  + ALA+ + RNL  L P
Sbjct: 631 GASHWGALLTGCSIHGNLALAEVAARNLFILEP 663


>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 231 KRSQLPKRFRV-RHPQLFPGISPFSFPQPSRW*PKR 335
           K+ +  KR R  R+P+ F   +P   P P RW PKR
Sbjct: 569 KKQKAKKRKRKPRYPKGFDPANPGPPPDPERWLPKR 604


>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
          Length = 692

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 268 IPSSFQEFHLFLFLNLVAGSRRGYSTRTDR*AHGLNLSKFLTLALAKAVLRRIFHRVGIA 447
           IP     F+  +F        +   T  D+ A   N+S F+T+A+   V+  I    GIA
Sbjct: 228 IPEGLSRFNASMFSGNEYLCGKPLDTPCDKLASPSNMSTFMTIAVVLIVVGVILAAAGIA 287

Query: 448 T 450
           T
Sbjct: 288 T 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,414,113
Number of Sequences: 37544
Number of extensions: 350886
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)