Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6052
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 57  RPC*AIQTISNRNRHYYFNALRRSSVTYTTVNVLSSLAFLKKTY*PSM-AGIVIQARR 227
           RP   ++  +N N  +  N  R    T T +N    +A +K+TY P M  G  I ++R
Sbjct: 140 RPIKRVKDSTNCNCGWK-NPSRIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKR 196


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 440 PTRWKIRRSTALAKASVRNLLRL 372
           PT WK+R ST   +   R   R+
Sbjct: 582 PTEWKVRPSTVEEREEFRRQERM 604


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 29  KEFVSKIPKTAMLGYPDD 82
           K F+ ++PK  ++  PDD
Sbjct: 338 KIFIRRLPKLLLMRVPDD 355


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 KAVLRRIFHRVGIATH*EDPVKTVT 480
           ++V  ++F+R G  T  + PVK +T
Sbjct: 42  RSVATQVFNRFGDDTESKLPVKAIT 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,441
Number of Sequences: 438
Number of extensions: 3408
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)