Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6049
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   3.7  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   3.7  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   8.6  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 457 KLYKIPLITLSFCF*LSFFIPLGDNFIAIITK 362
           K +  PL+ L +C  +S F+ L D F  ++ K
Sbjct: 107 KAWTQPLVFLYYCAYISKFLELTDTFFLVLRK 138


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 83  CNTDTILCISINSLHYKDYKRT 18
           C T  I+C+S +S+HY++   T
Sbjct: 359 CRTVMIVCVSPSSVHYEETHNT 380


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 492 KFTFYLFLFFKSNFIRFL*SHYPF 421
           K TF L  FF + F RFL   YP+
Sbjct: 379 KSTFTLRQFFHNEFPRFLPHAYPY 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,342
Number of Sequences: 5004
Number of extensions: 35937
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)