Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6049
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0120 - 20973635-20974879                                         29   1.6  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    27   6.5  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    27   6.5  
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    27   6.5  

>09_06_0120 - 20973635-20974879
          Length = 414

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 175 PLCLPCPNDSIPNPLTVPIALSYESSISLINAIPIQ 68
           P  LP P+ + P PL  PI+ S + ++SL+N +  Q
Sbjct: 104 PTFLPSPSSAPPPPLPAPIS-STKEALSLLNTLQTQ 138


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +1

Query: 49  FMDMHNIVSVLH*SN*YCFHMIGR*GL---SRDSEWSRLDMEGITAR 180
           F+D+H+ + V+H +   C +++G  G+   S+D+  +R D++ +  R
Sbjct: 451 FLDVHHAIDVMHLTKNLCVNLLGFLGVYGKSKDTVEARNDLKHMEQR 497


>04_01_0422 +
           5573833-5574647,5575577-5575692,5576922-5577130,
           5579676-5579795,5581616-5581744,5581828-5581953,
           5582945-5583000,5583084-5583183,5585155-5585272,
           5585374-5585583,5585902-5586226,5587094-5587187,
           5588021-5588129,5588246-5588514,5589153-5589280,
           5589983-5590217,5590858-5591046,5591326-5591609,
           5591698-5591890,5592040-5592207,5592429-5592514,
           5594391-5594550
          Length = 1412

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 181 DAPLCLPCPNDSIPN 137
           D+ LC+PC  DS+PN
Sbjct: 820 DSSLCMPCSLDSLPN 834


>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 105 SYDRAIGTVKGFGMESFGHGRHN 173
           +Y+R  GT +G+GM+  G GR N
Sbjct: 159 AYERRSGTGRGYGMKREGAGRGN 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,163
Number of Sequences: 37544
Number of extensions: 189396
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)