Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6048
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 2.1
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 27 2.8
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 27 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 4.9
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 4.9
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 8.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.6
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 25 8.6
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 8.6
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +3
Query: 444 PFSSLSRRLKCCAQTQLGN-----SILNILTYVNKTQNFTINVNAI 566
P S+LS++L +Q Q+ S+LNIL ++ Q T+N++++
Sbjct: 144 PSSALSKKLGSTSQHQIATPKSSASLLNILRSLHDEQKNTLNISSV 189
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 614 MPLSNEIGRTSLESATNGIYIDSEILCFIYVCKYVKY 504
+ ++ EIG L + N Y++S + C I+ + KY
Sbjct: 270 LTINKEIGLCGLYNLGNSCYMNSALQCMIHTHELTKY 306
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 635 PTAHWVTMPLSNEIGRTSLESATNGIYIDSEILCFIYVCKYVKYA 501
PT +++P+++ + +E TNG+ I S +Y+ K +YA
Sbjct: 286 PTTLSISIPIADLSYKHVVEWVTNGVAIFSFFYLLLYLWKRFRYA 330
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -1
Query: 271 VHSLPSLRAQDALIVYSAMLICFLHTKLVLCGN*DVINNCRCRQWKPTRPGP-VTLKNIQ 95
+++LP++ Q+A ++C+L L +V+ N + + VTLK +
Sbjct: 2900 IYTLPNIEIQEAFYKLREQVLCYLQNPRDLKTGLEVVTNTNLMYFNSRQKSEFVTLKG-K 2958
Query: 94 CMLNLCKGDNIHEIRADAARTKL 26
+ L +G+ +++ A A + L
Sbjct: 2959 FLEKLNRGEEANQMYAAAVQIDL 2981
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 358 APTQPISGCYNLLNSNRKKRLRFVTSPVPVHSLP 257
APT S + + NRK RL+ V SP+ +++P
Sbjct: 173 APTPSPSNSKSPPSENRKNRLQNVLSPIASNNVP 206
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 331 YNLLNSNRKKRLRFVTSP 278
YNL+N+N KK + TSP
Sbjct: 116 YNLVNANNKKAYQVATSP 133
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 85 LTYIGYSLK*PAPVASASTVGIDSCLSHLSSRTTQVL--YAKSI 210
L +GYSL ++ S GI S +H SS QVL Y KS+
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSM 150
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 629 QLVKQSRPSLRSRFNQNGHNASATG 703
++ ++SRP R+ N H AS+TG
Sbjct: 125 EIAEESRPLERTHSGSNHHEASSTG 149
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 379 YILFCLIAPTQPISGCYNLLNSNRKKRLRFVT 284
YIL ++ T G YN L+SNR+K ++ +
Sbjct: 333 YILLKKLSETIVALGQYNYLDSNRRKCIKLTS 364
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 336 PLIGCVGAIKQNKMYSKIFFVSTLSLGGV 422
PLIG GAI QN + IFF++ L GG+
Sbjct: 231 PLIG--GAISQNTTWRWIFFIN-LPTGGL 256
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 254 ITSTRRSHRIQRDAYMLFAYKTCVVRELRCDKQLSMPTVEAD 129
I ST +H ++DA + TCV + C+ +L ++ D
Sbjct: 190 ILSTACNHFYEKDAILSLLNPTCVCPVVGCEARLQRSLLKED 231
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 84 FNIHWIFFKVTGPGRVGFH-CRHRQLFITSQFPHNTSFVCKKHISI 218
F I++I F++ H C++ L + S HN + VC ++S+
Sbjct: 13 FLIYFIIFRLCCCSPQTSHWCKYPALCLKSPDTHNENLVCDAYLSV 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,027
Number of Sequences: 5004
Number of extensions: 67775
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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