Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6048
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0672 - 5041742-5043175                                           29   2.9  
11_03_0128 - 10437407-10438049,10438097-10438272                       29   5.2  
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    29   5.2  
06_03_0382 - 20142830-20144329                                         28   6.8  
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372...    28   6.8  

>07_01_0672 - 5041742-5043175
          Length = 477

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 126 RVGFHCRHRQLFITSQFPHNTSFVCKKHISIALYTMRASCARNDG 260
           R+ FH RHR L + S  PH    VC++  +I L   R     N G
Sbjct: 149 RLLFHRRHRDLVVDSYLPH----VCREGRAIMLRNRRRKLFTNAG 189


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 115 PAPVASASTVGI--DSCLSHLSSRTTQVLYAKSI*ASRCI 228
           P+P AS+ ++G     C SHLSS T    +  +  A RC+
Sbjct: 233 PSPTASSESLGSWGSGCRSHLSSPTCSSWWRTTALACRCL 272


>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 16  CHPLVSFAQHPRGSHEYCLLYINLTYIGYSLK*PAPVASASTVGIDSCLSHLSS 177
           C+ L +  Q P   +   L Y++L++       P PV ++S + +D   +H SS
Sbjct: 193 CNMLTTLEQSPSLVNMSNLAYLDLSFNRLQGSIPIPVTTSSEIALDYSNNHFSS 246


>06_03_0382 - 20142830-20144329
          Length = 499

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = -1

Query: 454 EENGIEKFPVPTPPRDKVETKKILLYILFCLIAPTQPISGCYNLLNSNRKKRLRFVTSPV 275
           E++     P+P PPR ++   K L        +P+  +SG +      R +R+RFV+   
Sbjct: 338 EDSASLPLPLPLPPRPRMPRPKSLNAFDIIASSPSFDLSGLF----EERGERMRFVSGAP 393

Query: 274 PVHSLPSLRAQDALIVYSA 218
               +  L+    ++ ++A
Sbjct: 394 VADIIAKLQEIAGMVSFTA 412


>05_01_0469 -
           3725117-3725170,3725282-3725356,3726938-3727015,
           3727091-3727183,3727582-3727696,3728028-3728158,
           3728243-3728512,3728983-3729120
          Length = 317

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 123 GRVGFHCRHRQLFITSQFPHNTSFVCKKH 209
           G V FHC+   +  T+QF      VC+KH
Sbjct: 233 GDVIFHCQQESISTTAQFEDVLLDVCEKH 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,964
Number of Sequences: 37544
Number of extensions: 441192
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)