Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6048
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-13|CAN86622.2|  282|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z71259-12|CAA95791.3|  285|Caenorhabditis elegans Hypothetical p...    31   0.86 
AB303039-1|BAF62083.1|  282|Caenorhabditis elegans inositol-1(or...    31   0.86 
AB303038-1|BAF62082.1|  285|Caenorhabditis elegans inositol-1(or...    31   0.86 
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     30   2.0  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    30   2.0  
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z71259-13|CAN86622.2|  282|Caenorhabditis elegans Hypothetical
           protein F13G3.5b protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 414 GGVGTGNFSIPFSSLSRRLKCCAQTQLGNSILNILTYVN 530
           GGV T     PF  +SR++ C    +LG  +   LT+V+
Sbjct: 239 GGVVTDPTGSPFDVMSRKVLCAGTAELGRDLSACLTHVD 277


>Z71259-12|CAA95791.3|  285|Caenorhabditis elegans Hypothetical
           protein F13G3.5a protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 414 GGVGTGNFSIPFSSLSRRLKCCAQTQLGNSILNILTYVN 530
           GGV T     PF  +SR++ C    +LG  +   LT+V+
Sbjct: 242 GGVVTDPTGSPFDVMSRKVLCAGTAELGRDLSACLTHVD 280


>AB303039-1|BAF62083.1|  282|Caenorhabditis elegans inositol-1(or
           4)-monophosphatase protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 414 GGVGTGNFSIPFSSLSRRLKCCAQTQLGNSILNILTYVN 530
           GGV T     PF  +SR++ C    +LG  +   LT+V+
Sbjct: 239 GGVVTDPTGSPFDVMSRKVLCAGTAELGRDLSACLTHVD 277


>AB303038-1|BAF62082.1|  285|Caenorhabditis elegans inositol-1(or
           4)-monophosphatase protein.
          Length = 285

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 414 GGVGTGNFSIPFSSLSRRLKCCAQTQLGNSILNILTYVN 530
           GGV T     PF  +SR++ C    +LG  +   LT+V+
Sbjct: 242 GGVVTDPTGSPFDVMSRKVLCAGTAELGRDLSACLTHVD 280


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 442 IEKFPVPTPPRDKVETKKILLYILFCLIAPTQPISGCYNLLNSNRKKRLRFVTSPVPVHS 263
           +EK P P P    V T  +LL      +  ++PI  C+  L +         T PV V S
Sbjct: 427 VEKIPPPPPESCHVSTSTVLLEFADQSVG-SEPIKHCHVALGTEPTSTREVGTVPVTVRS 485

Query: 262 L 260
           L
Sbjct: 486 L 486


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 442 IEKFPVPTPPRDKVETKKILLYILFCLIAPTQPISGCYNLLNSNRKKRLRFVTSPVPVHS 263
           +EK P P P    V T  +LL      +  ++PI  C+  L +         T PV V S
Sbjct: 427 VEKIPPPPPESCHVSTSTVLLEFADQSVG-SEPIKHCHVALGTEPTSTREVGTVPVTVRS 485

Query: 262 L 260
           L
Sbjct: 486 L 486


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 426 TGNFSIPFSSLSRRLKCCAQTQLGNSILNILTY-VNKTQNFTINVN 560
           TG FS+   S    L+C AQ   G       T+ + +TQNF+  +N
Sbjct: 96  TGEFSMKLKSYKNNLECVAQVLKGGLRPEAHTFKLGRTQNFSPKLN 141


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 277 VPVHSLPSLRAQDALIVYSAMLICFLHTKLVL-CG 176
           +P  S  SLR ++ + ++S +L+ +LH  ++L CG
Sbjct: 187 IPYASDGSLRVKNTIYLFSGVLLIWLHYSIILFCG 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,919,381
Number of Sequences: 27780
Number of extensions: 394090
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)