Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6048
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   0.99 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.0  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 275 ARSQPPIITSTRRSHRIQRDAYMLFAYKTC 186
           A SQPP ITS   + R+ +    L   + C
Sbjct: 87  ANSQPPRITSVPNTSRLDKSEISLATKQAC 116


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 541 FCVLFTYVSMLSMLFPS 491
           F V+FTY+ +L  L PS
Sbjct: 414 FIVIFTYIIILITLVPS 430


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 379 YILFCLIAPTQPISGCYNLLNSNRKKRLRFVTSPVP 272
           Y L+      + + G Y L   ++K  + F+T  +P
Sbjct: 79  YFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDIP 114


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 498 NSILNILTYVNKTQNFTIN 554
           N +LN+L ++NK   +  N
Sbjct: 76  NDVLNVLYFINKNDKYEEN 94


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 587 TSLESATNGIYIDSEILCFIYVCKYVKYAV 498
           TS +SA   I   +  +CF+YV  +  Y V
Sbjct: 263 TSSQSAEIRIAKAAITICFLYVLSWTPYGV 292


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 516 LTYVNKTQNFTINVNA 563
           LT+VN T +FT  V+A
Sbjct: 101 LTFVNDTVSFTTTVSA 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 589  RPISLDNGIVTQWAV 633
            RP S  NG++TQ+ V
Sbjct: 1201 RPPSQPNGVITQYTV 1215


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 427 VPTPPRDKVETKKILLYI 374
           +P  PRDK+E  +  LY+
Sbjct: 91  LPVNPRDKIEGAEDCLYL 108


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 427 VPTPPRDKVETKKILLYI 374
           +P  PRDK+E  +  LY+
Sbjct: 91  LPVNPRDKIEGAEDCLYL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,694
Number of Sequences: 438
Number of extensions: 4677
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)