Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6045
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 32 0.094
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 30 0.29
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 29 0.66
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 29 0.66
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.88
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.88
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 28 1.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 2.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.7
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 2.7
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.7
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 3.5
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 4.7
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 4.7
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 26 4.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.2
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 25 8.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 8.2
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 265 ECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEV 444
+C C RRY N+ + K D+ ++ K+ +E+ L R W +++W EE
Sbjct: 422 QCANCGRRYG-NDPESRKELDKHSDWHFRINKRIRESSLHGINRCWFVMEEEWVNSKEEE 480
Query: 445 D 447
D
Sbjct: 481 D 481
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 409 SLSIFVFVAPVSLPYTAFCVHFLRYFPCLSLFLAFCYSLCT-SFGISNTPSLLPQFPCST 233
+L ++ +AP L +A C+ + + PC A C L T +S P+L +
Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLSLSFRPNLALPLSMDS 383
Query: 232 SRLLFSC 212
S ++ C
Sbjct: 384 SDVVLLC 390
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 29.1 bits (62), Expect = 0.66
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 322 KDRENNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDNDIWGLGYKIVSKKLRG 498
K + +E +H K K A+LE + +K K D++ + E+ +ND G+ K+ ++L G
Sbjct: 776 KIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFTPILEKSENDYNGV--KLECEQLEG 832
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 184 DASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQ 363
D S+ +++ K V N+ A +RK L R+ R + D E+N E +H K+
Sbjct: 154 DRSITSKSSHKPVNVIVRNR--ASSRKPPLTSTHRFRRYGAVISDSDDDESNTEQDHSKE 211
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 28.7 bits (61), Expect = 0.88
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +1
Query: 190 SMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNE-ENEHKKQY 366
S+ K N K +G + N E ++ + KKL G+ ++ +E E E +K+Y
Sbjct: 291 SLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRY 350
Query: 367 KEAKLELQRRIWKAKDDKWREVCEEVDND 453
++ KLE + ++ + + + +EVD++
Sbjct: 351 EQMKLEKMNK-YQGVNLFIKNLQDEVDDE 378
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 152 MGVEICAPYRLLLNLSTSSLWRFHLFICAWHWDRGNTCF 36
+GV+ LLN S+++ W FH + W NT F
Sbjct: 109 VGVQYIKELYTLLNESSNNTWHFHYIVLLWLSQALNTPF 147
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 457 IYHCRLPRTLPSIYRLSLSIFVFVAPVSLPYTAFCVHFLRYFPCLSLFLAFCYSLCTSFG 278
+Y C+L + L Y L ++ F +L Y+ F L+ CL L YS+ + G
Sbjct: 499 LYFCKLAKLLLRKYPLDIAEHQF----ALVYSRFQRIPLKQISCLKQSLVAYYSVLSEVG 554
Query: 277 ISN 269
I+N
Sbjct: 555 ITN 557
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 442 VDNDIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFER 579
++ DI+ + + VS+K GN PI++ +Q+I F EH + R
Sbjct: 241 IEKDIYLVSHLPVSEKHPGNIPISLVNKSVQAICS--FAEHYNLLR 284
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 229 YWWNKEIAEARKECLKCRRRYTRNNKK----LGKGKDRENNEENEHKKQYKEAK-LELQR 393
+ W+ + C CRR YT N + + + + +NE KK+ KE K +EL
Sbjct: 44 FCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSN 103
Query: 394 R 396
R
Sbjct: 104 R 104
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 301 NKKLGKGKDRENNEENEHKKQYKEAKLELQRRIWKAKDDKW 423
N+K+ K DR+N++E + + K K E I D W
Sbjct: 411 NRKMAKELDRKNSKELQKINKVKRTKEECLSEIILLSPDDW 451
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 490 AFLTLFCIPVPIYHCRLPRTLPSIYRLSLSIF 395
A L + C + IYH L LP+ + L + +F
Sbjct: 146 AILCVVCDSLEIYHSNLSTLLPNNFELCIDVF 177
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 235 WNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQYKEAKLELQRRI 399
W +I E C++C RR+ N+++ ENN + + + K EL +
Sbjct: 313 WKLDILEDIDRCIQCCRRFLSANQRINYSSS-ENNPFSFTSQDVEALKDELSSNL 366
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 169 TTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGK 318
+TA C+A+ P N+ NKE E R++ + RR N+K K
Sbjct: 213 STAFCEANCPSGNDAS-------NKEFFETRRKEFQLERREQNRNQKSSK 255
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +1
Query: 235 WNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQYKEAKLELQRRIWKAKD 414
W K E + E K R KK + E + E K+++ + E W+
Sbjct: 143 WKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNSMDE-----WRKSM 197
Query: 415 DKWREVCEE 441
D+WR+ +E
Sbjct: 198 DEWRKSMDE 206
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 289 TSFGISNTPSLLPQFPCSTSRLLFSCGCF 203
TSF I + PQ + S+LL SC CF
Sbjct: 513 TSFAIKASAFQNPQLLKTCSQLLSSCSCF 541
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = -1
Query: 433 TLPSIYRLSLSIFVFVAPVSLPYTAFCV 350
++P + ++L + +F+APV + +FC+
Sbjct: 115 SIPGVCAVTLIVIMFLAPVGRLFWSFCI 142
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 187 ASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNK 306
A + ++ +++ V W ++ C+KC ++Y RN++
Sbjct: 1588 ARLRARSAKQRFPVSQWKAKLEALTDGCIKCSQKYGRNSR 1627
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 106 LRPAFGGSTFSSVHGTGIEAIHALSR 29
L P GGST + + GIE AL+R
Sbjct: 341 LTPHIGGSTEEAQYNIGIEVSEALTR 366
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 190 SMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQYK 369
S+ ++ KKK W + +K L ++R N KK + K + + + KK K
Sbjct: 172 SIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231
Query: 370 E 372
+
Sbjct: 232 K 232
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 457 IYH-CRLPRTLPSIYRLSLSIFVFVAPVSLPYTAFCVHFLRYFPCLSLFLAF-CYSLCTS 284
+YH L +L I L F+F + +S P +F + FPC SLFL+ +SL +
Sbjct: 160 LYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFIL-----FPCFSLFLSSNSFSLASP 214
Query: 283 F 281
F
Sbjct: 215 F 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,683
Number of Sequences: 5004
Number of extensions: 66511
Number of successful extensions: 244
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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