Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6044
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    37   0.003
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.8  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   4.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.2  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   7.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 153 NDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVL 332
           N +  A R ++RI  +  +   +R  R+YEKP + R RV  E+ +A +   + R +    
Sbjct: 55  NSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNLAK 114

Query: 333 RKNR 344
              R
Sbjct: 115 NMRR 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 150 FVQTLCEL*KKDVYLIIGAATDAFYSDWIKKFQTFNS 40
           F+ T C++ + D+ +I       FY +WI K +  N+
Sbjct: 267 FIDTACKVWRVDMTMIAYETNRNFYMEWIHKKRIINT 303


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 349 SCLFFLNTNCIFLSISSL*MALHFSWLTRRLV*NGFS*YLVSLY 218
           +C +  N +  FLS+  +   +++ +L R    NG S + + LY
Sbjct: 51  ACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLY 94


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = -3

Query: 486 VFLERSFSQCHVFQLLSRSIPIIHMMSGY-----NLLFTFDLSFSNILERVHVYFFLIQI 322
           +F    + QC    L+ R +  ++++S Y     NL    +L    +L ++H  FF + I
Sbjct: 275 LFGRDQYIQCQALYLIIR-LTCLYLLSCYESEILNLSSDTNLESDFLLRQIHAAFFFVTI 333

Query: 321 VFFSPYLHCRWP 286
            F    + C  P
Sbjct: 334 CFTWISISCLKP 345


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 717 QLQWVWSIVRAYKNIFLGR 773
           ++QW+W   R+ +N+F+ R
Sbjct: 2   RMQWIWKSRRSLQNVFIRR 20


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 456 HVFQLLSRSIPIIHMMSGYNLLFTFDLSFSNILERVHVYFFLIQIVF 316
           H+  LLS + PI+   +    LFTF++     LE +H Y+  I  +F
Sbjct: 182 HIKTLLSDNSPIVVPAA----LFTFEVVCPEKLEIIHPYYHRICTLF 224


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 474 SPKKLNVKKNYDSRIKIKDI*DT*TSRKLYTNKHLK 581
           +P+K  V +   +++++ D+  + +   L+T+KHLK
Sbjct: 95  TPEKSTVHRPKANKVEVTDLPSSSSVEHLHTSKHLK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,822
Number of Sequences: 5004
Number of extensions: 63358
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)