Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6044
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-8|AAF99924.1|   78|Caenorhabditis elegans Hypothetical pr...    84   1e-16
Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U70849-8|AAF99924.1|   78|Caenorhabditis elegans Hypothetical
           protein F29B9.10 protein.
          Length = 78

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 36/73 (49%), Positives = 53/73 (72%)
 Frame = +3

Query: 144 VQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQ 323
           VQNND+D A  L+NR+M  EG+L   R T++Y+KP+  R+ ++ E   AI+NEDM RK++
Sbjct: 2   VQNNDVDGAFGLLNRLMDSEGMLKIIRRTQFYQKPYMQRKTLSMEASTAIFNEDMNRKMK 61

Query: 324 FVLRKNRHEPFPG 362
           F++RKNR +  PG
Sbjct: 62  FLVRKNRPDKHPG 74


>Z50006-3|CAA90299.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.2 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 4   QFN*DLRFCNTIRIESL-EFFYPITVKCICRCAYYQIDILLS*LAQ 138
           Q N   RFCN + + ++    Y   +K +C C YY  D+  S L Q
Sbjct: 282 QQNGPARFCNIMSVLNVANQTYDNIIKYVCLCQYYHSDMQPSKLYQ 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,158
Number of Sequences: 27780
Number of extensions: 339458
Number of successful extensions: 805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)