Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6043
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   1.8  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   3.1  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   4.2  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 433 VVVPTRVDSQEVLKPV--ITQIIILRV*FLLHDVIPSPWRSIVNI 561
           ++ P ++  +  L+ V  +T  I+L + F+LHD   S W+S+V I
Sbjct: 202 LIKPFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 50  SLRRHYSSRTGR*AHVLNLRALANTSPSKSNPSQILPPD 166
           SLRR+YS+RT   A  L++R  A+ S   S  S + P D
Sbjct: 151 SLRRYYSTRT---AQRLDVRRPASRSSRYSKTSDLPPSD 186


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 153 FYHRIATH*ENPVRNSVDFSITEHVSNSFFY 245
           F  R+ TH  N  +NS  F + + VS+S FY
Sbjct: 203 FEVRMLTHENNNKKNSYVFRLFDRVSSSTFY 233


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 543 EVNREHLLSTYFIKKIWYPPEIRTPVHRSTRVHRT 647
           EVN +  +   F   +W P    TPV RS R HRT
Sbjct: 8   EVNSDGSMLQPFSNPLWVP----TPVGRSGRKHRT 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,735
Number of Sequences: 5004
Number of extensions: 53906
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)