Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6038
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    33   0.010
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    26   1.1  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   2.0  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   2.0  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   2.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   3.5  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   3.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    23   8.1  

>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 33.1 bits (72), Expect = 0.010
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 217 ALAGHSIATVLEVHILLCEVTR-GEVEVKVVE--GHDARQQHALHAALRVLEMIPVHE 53
           +LA H I  +L + + + E  + G + V ++   GH+A+QQ   + A+ + EM P  E
Sbjct: 200 SLADHIIFAILSILVFIAETVKPGSIRVNLIRKMGHEAKQQVNEYTAIPLHEMNPESE 257


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 243 AFSTATRPEPSRDIPSRRSLR 181
           A ST T+  P RDIP +RS+R
Sbjct: 24  ANSTPTKLYPDRDIPLQRSIR 44


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 38  SKKGIFMYGNHFEDPESCVECMLLPRIMSLNNLHFHFSSCNFTE-KNMYLKDRRDGMSRE 214
           S   +F   + F   +  V   +L  I SLN + FH ++  F++  ++  K+++   S  
Sbjct: 621 SLPSLFNMASQFTAEDRFVATSVLQSIESLNRVKFHSATQPFSQTTSLLFKEQKTDGSFR 680

Query: 215 GSGRVAVLK 241
           G  +V  +K
Sbjct: 681 GQRQVEHVK 689


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 125 LNNLHFHFSSCNFTEKNMY 181
           +N  HFH SSC    KN Y
Sbjct: 45  VNYNHFHSSSCQSEAKNFY 63


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   WLYLYIDLHGHASKKGIFMY 61
           W+Y YI+ H   S  GIF++
Sbjct: 75  WIYKYIEPHSLISIPGIFVF 94


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 186  LRYIFFSVKLHEEKWK*RLLRDMMR 112
            LR I+F+V  +EE++  RL +D  R
Sbjct: 1105 LRMIYFTVTSNEERFVSRLFQDAFR 1129


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 65  NHFEDPESCVECMLLPRIMSLNNLHFHFSSC 157
           N F++ E+C+ C  L +I ++N L +   +C
Sbjct: 136 NEFKEIEACILCSALEKI-NVNELFYMCRAC 165


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 171 FSVKLHEEKWK*RLLRDMMRGSSMHSTQLSGSSK*FPY 58
           F V+ H ++    +L+++MR S+ H+T + G    F Y
Sbjct: 579 FIVRSHHDQL---ILKELMRQSNCHATVVVGKYDPFDY 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,923
Number of Sequences: 5004
Number of extensions: 18486
Number of successful extensions: 48
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)