Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6038
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    38   0.002
U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical pr...    32   0.097
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    27   2.8  

>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
            protein F56H1.5 protein.
          Length = 1015

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
 Frame = +2

Query: 8    YLYIDLHGHASKKGIFMYGNHFEDPESCVECMLLPRIMSLNNLHFHF-SSCNFTEKNMY- 181
            + Y+D+HGH+ K   F+YGN+  +     + + +        LH     +   T  + + 
Sbjct: 885  FAYVDIHGHSKKWDYFVYGNNASESWRADDVLDVGAAQLEEELHLALPKALEATCPSRFN 944

Query: 182  LKDRRDGMSR--EGSGRVAVLKATGLVRSYTLE---CNYNTGR 295
              + R  ++R  E S RV V +  G+  +YTLE   C ++ G+
Sbjct: 945  ASECRFNITRAKESSARVNVWRQFGVSTAYTLESTFCGFHKGQ 987


>U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical
           protein EEED8.6 protein.
          Length = 459

 Score = 31.9 bits (69), Expect = 0.097
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 11  LYIDLHGHASKKGIFMYGN 67
           +Y+DLH H+ K   F+YGN
Sbjct: 297 IYVDLHAHSQKPNCFLYGN 315


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 110 PRIMSLNNLHFHFSSCNFTEKNMYLKDRRDGMSREGSGRVAVLKATGLVRS 262
           PR+    N+   + + NF  KN  L DRR  +S     R    +AT L  S
Sbjct: 254 PRLFLKKNVEKKYYNHNFQFKNATLNDRRSIISGHERARSNDSRATSLFSS 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,542,378
Number of Sequences: 27780
Number of extensions: 111383
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)