Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6038
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 133 VVEGHDARQQHALHAALR 80
           + EGHD R+Q +++  LR
Sbjct: 57  IFEGHDDREQPSVYPLLR 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 206 SREGSGRVAVLKATGLVRSYTLECNYN 286
           +R GS RV      GL+R   L  +YN
Sbjct: 319 NRLGSDRVDETTFLGLIRLIVLNLSYN 345


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 92  VECMLLPRIMSLNNL 136
           + C++  +IMS+NNL
Sbjct: 291 IMCLIAGKIMSINNL 305


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 158 NFTEKNMYLKD 190
           NFT  NMY KD
Sbjct: 662 NFTIPNMYFKD 672


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +2

Query: 116 IMSLNNLHFHFSSCNFTEKNM 178
           +  +NN+  +  + N++ KNM
Sbjct: 191 VTGMNNIETYIVNTNYSSKNM 211



 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 158 NFTEKNMYLKD 190
           NFT  NMY KD
Sbjct: 662 NFTIPNMYFKD 672


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 221 GRVAVLKATGLVRSYTLECNY 283
           G + V  A  LVR     CNY
Sbjct: 58  GNILVCVAVFLVRKLRRPCNY 78


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 261 DRTRPVAFSTATRPEP 214
           DR RP + +T+ + EP
Sbjct: 883 DRKRPASQATSVKAEP 898


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 172 LLCEVTRGEVEVKVVEGHDAR 110
           L C VTRG++ + +    D R
Sbjct: 630 LTCSVTRGDLPLSISWLKDGR 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,104
Number of Sequences: 438
Number of extensions: 1402
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)