Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6036
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.6  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.7  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   2.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.4  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.4  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 214 FIFYLFVGFSTKAYYVSFF-LNYYLFSEFYSRRLHSFPFGCLSCYRGVIAMSCGHRRATL 390
           F F     F +   ++SFF L  +L    YS  LH F    ++CY   + +S       L
Sbjct: 27  FFFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLCLSL--VALLL 84

Query: 391 YIRRRPTRELSIHLPTFIYTYISACIETRH 480
           +    P + +++ L  F+    S+ +   H
Sbjct: 85  FYTLYPFQSITLPLMPFLEKTESSILTISH 114


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 142 EKYYFDSKMKRTFLKLNLVSY*LKFIFYLFVGFSTK-------AYYVSFFLNYYLFSEFY 300
           + Y++ SKM+R  + ++ V   L  I      F  K       A     F N + FSE+ 
Sbjct: 237 DSYFYFSKMRRISIDVDYVDEDLNLINAYLSQFGKKRSLNELCALLSRRFSNRHTFSEWR 296

Query: 301 SRRLHSFPF 327
           +  +H FPF
Sbjct: 297 ALFMHFFPF 305


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 301 SRRLHSFPFGCLSC---YRGVIAMSCGH 375
           + +    PF CL C   YR  IA +CGH
Sbjct: 244 NEKKEDIPFVCLICKKDYRSPIATTCGH 271


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 602 YFSREAVMRFDLMGYGNRCNYTETL 676
           YFSR   +   L  YGNRC+ T+TL
Sbjct: 260 YFSRRPTL---LNTYGNRCSSTDTL 281


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 337  SCYRGVIAMSCGHRRATLYIRRRPTRELSIHLPTFIYTY 453
            SC+ GV+ ++  H R  L++ R    +LS+ +  ++Y++
Sbjct: 1414 SCWTGVL-LNKFHSRQYLFLSRDLVEDLSLRVWEYVYSH 1451


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 670 DLRTISQGGGAHLRWR 717
           D++T++ GGG+ L WR
Sbjct: 347 DIQTVAAGGGSRLFWR 362


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 479 IITGIIYIKFDYLYDSNVRPFGLRLFT 559
           ++TG++ + FD L+ SN +  GL + T
Sbjct: 413 VLTGVVNLSFDTLHSSNAK--GLTIMT 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,330
Number of Sequences: 5004
Number of extensions: 57734
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)