Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6036
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103           31   0.94 
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198...    30   1.6  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           29   5.0  
07_01_0670 + 5030971-5032698                                           28   8.7  

>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
          Length = 404

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 312 PFVSFRLFVMLPRSYSYVMRPPARHFIHPTPPDTRALHTPT 434
           PFV++     LP ++ +V  P +   + PT P ++A+ +PT
Sbjct: 82  PFVNYHNASQLPENFHFVGAPMSYSTMSPTTPCSKAIPSPT 122


>07_01_0266 +
           1977961-1978120,1979547-1979680,1979813-1979911,
           1980257-1980414,1981930-1982018,1982678-1982769,
           1983658-1983706,1983953-1983966
          Length = 264

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 545 LRLFTSRTSCESARVGTTT--YFSREAVMRFDLMGYGNRCNYTETLERYLKGGGR 703
           +RLF+S+  C  +   T    Y +    +R    G G RC+  + L+ Y   GGR
Sbjct: 117 VRLFSSQKPCAQSAKDTILRIYVAHRKTLRGAPWGDGGRCHVGDLLQSYSARGGR 171


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 303 EATPFVSFRLFVMLPRSYSYVMRPPARHFI 392
           +A  + S R+F   P SYS+ +R P RHF+
Sbjct: 131 DAAMYQSARVF-KAPSSYSFRIRDPGRHFV 159


>07_01_0670 + 5030971-5032698
          Length = 575

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 325 FGCLSCYRGVIAMSCGHRRA-----TLYIRRRPTRELSIHLPTFIYTYISAC-IETRHYN 486
           FG LS + G +  +   RR       L++RRR  R L+   P +I   IS C    R+Y+
Sbjct: 30  FGSLSFFLGPLLAAYAPRRLLLTYFNLFLRRRARRLLNAVDP-YITVDISECPAAARYYS 88

Query: 487 RYN 495
           RY+
Sbjct: 89  RYD 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,523
Number of Sequences: 37544
Number of extensions: 371531
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)