Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6036
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z35641-3|CAE17748.1|  129|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 211 KFIFYLFVGFSTKAYYVSFFLNYYLF 288
           K +FY+F   +T AY+V+F  NY +F
Sbjct: 180 KVLFYIFAFITTLAYFVAFTTNYMVF 205


>Z35641-3|CAE17748.1|  129|Caenorhabditis elegans Hypothetical
           protein C38H2.3 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 374 TGAPLYTSDAARHESSPYTYLPLFIRIYPLVLRRVIITGII 496
           + +PL      + ++SP T LP  +R  P   RR ++  II
Sbjct: 70  SSSPLIVISPPKDDASPITVLPTAVRSMPETHRRSLMVAII 110


>AF125971-4|AAD14766.1|  381|Caenorhabditis elegans Hypothetical
           protein Y4C6B.3 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -3

Query: 721 DISNVNAPPPLEISF*GLSIVTTVAIPHQ--------IETHYCFTAEIGGGTYPCG 578
           ++S ++    L + F G+S +    IPH+        +    CFT+   GG Y CG
Sbjct: 268 EMSKIHIFNTLSVGFVGISFIAFGQIPHEHNLSAVICLGVLECFTSFSSGGFYKCG 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,576
Number of Sequences: 27780
Number of extensions: 323373
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)