Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6035
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    45   1e-05
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    31   0.13 
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    28   1.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.9  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = -1

Query: 370 IQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVL 194
           +Q  R   P+ LA+A++I+K+QGQT+    +DL    F  GQ YVA SR      L VL
Sbjct: 704 VQASRSQIPLILAYAISIHKAQGQTLDRVKVDLGR-VFEKGQAYVALSRATTQEGLQVL 761


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 435 FKMVPSLTFFIIFLMTNRVPLLS-RGGFKLRSKIIGDSTFNCKLCGGMPGKSSEFKNSVG 611
           +K + +  FF I L++N   L S   GF LR  ++  ++    LC   P    E+KNS G
Sbjct: 19  WKYIQACIFFAIILISNFYGLKSFTDGFLLRRAVLNQTS----LCENPPADVREWKNSSG 74

Query: 612 KFTASVSSQTVSI 650
            +   +  + V +
Sbjct: 75  CWAPKIFERAVIV 87


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 682 LLPGDLVSYKSIDTVCDDTEAVNFPTEFLNSLDLPGMPPHN 560
           L+PGD +  ++ + V +  +  N P EF   +D+ GM  +N
Sbjct: 25  LIPGDGIGRETSNAVTEIFKTANVPIEF-EEIDVTGMEKNN 64


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 TIFFVSPSLANTNKLDGLPTREHATYNCP 251
           T  FV P L+    L+ LPT E  T+NCP
Sbjct: 711 TAVFVKPDLS----LEKLPTLEINTFNCP 735


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 361 KRIPFPITLAFAMTINKSQGQTM--SVCGLDLSTPCFSHGQLYVACSRVGKPSSLFVLAK 188
           + + + I+L  ++T+NK QG ++  +V GL+  T     G  YV+      PS+L +   
Sbjct: 169 RSVTYSISL--SLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPSNLLMTRA 226

Query: 187 D 185
           D
Sbjct: 227 D 227


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 399 EYLLYPQMCQFNLSVFH--FRLHWHLQ*LLINPKAKQC 292
           E +L      F  S++H  F  HW +  LLINP    C
Sbjct: 530 ELILKFMQRNFENSLYHQSFSSHWFISRLLINPIRMLC 567


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 712 LAILNLKIQQLLPGDLVSYKSIDTVCDDTEAVNFPTEFLNSLDL 581
           +A+      ++L G   S+ SI  +  +   +N P E+++ LDL
Sbjct: 221 IALFFCSRNEVLSGTNDSHDSIHHIISNNAQLNIPQEYIDVLDL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,960
Number of Sequences: 5004
Number of extensions: 66235
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)