Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6034
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 31 0.66
10_06_0019 - 9688395-9688867,9688905-9689070 30 1.5
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 30 1.5
04_04_1329 - 32691667-32691819,32691920-32692081 29 2.0
01_06_1749 - 39636951-39638102 28 4.6
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454... 28 6.1
01_06_0355 + 28657833-28660665,28660762-28661126 28 6.1
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 27 8.1
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 27 8.1
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +3
Query: 138 KLRIKDKTSGAFERCTGVRISLAGTNFSNEIRTQQMFTIDFHDE 269
KL KD G RCTGV I G N +I T DFH E
Sbjct: 147 KLSKKDG-GGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>10_06_0019 - 9688395-9688867,9688905-9689070
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 355 VRTHKRSYHQ*LRKL*FCGF*FLLHDVIPSSWKS 254
VR++ S+H K +C F F+ HDV+ S W S
Sbjct: 107 VRSYATSFHG-TGKAEYCCFTFIRHDVLASQWSS 139
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 507 LEPIDIHNANAPHTLRYSSKVSV*SQRLPRPSNRNASLLHGRNRR 373
++P IH+A+ H S +V Q PRP + +LL RN R
Sbjct: 408 IDPTKIHSADLLHVWSMPSTANVSQQEAPRPL-EHVNLLAARNER 451
>04_04_1329 - 32691667-32691819,32691920-32692081
Length = 104
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -3
Query: 223 LEKLVPASEIRTPVHRSNAPDVL----SFMRSLHYE 128
L+ L+P S+ R HR +A VL S++RSLH E
Sbjct: 39 LQALLPESQARNGAHRGSAARVLQETCSYIRSLHQE 74
>01_06_1749 - 39636951-39638102
Length = 383
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 442 SIVTTAAPPFKPKRITASRQKQAGR 368
S+ + AAPPF P RIT+ GR
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGR 189
>04_03_0797 +
19744815-19745030,19745190-19745273,19745375-19745473,
19745588-19745695,19747332-19747700
Length = 291
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 384 CREAVMRFGLKGGAAVVTILRP*NYISRCVAHLRCGC 494
CREA+ G+KG V+++ R N + + +R GC
Sbjct: 86 CREAMEEAGVKGNINVMSLYRN-NVTTITITDIRAGC 121
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 544 WTSSQPT--WC*VVTGAHRHPQRKCATHL 464
WT++ P W V G HRHP R A L
Sbjct: 56 WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 436 VTTAAPPFKPKRI-TASRQKQAGRWHLPVRTHKRSYHQ*LRKL*FCGF*FLLHDVIPSSW 260
V + P KP R+ T R+ W L H+ LR + G + H VIP++W
Sbjct: 190 VMESLPSGKPTRVWTPMRRSWGSIWRLDAN-HRLQGPFSLRMVSESGQTVIAHQVIPANW 248
Query: 259 KSIVN 245
++ N
Sbjct: 249 RANTN 253
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 461 DIVLRSQYSHNGCPALQTETH 399
D++ RS H P QTETH
Sbjct: 477 DVIRRSASGHEAAPPFQTETH 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,143,729
Number of Sequences: 37544
Number of extensions: 358763
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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