Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6033
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    30   0.44 
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   4.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   7.2  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  

>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 22/79 (27%), Positives = 41/79 (51%)
 Frame = +1

Query: 148 LRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLE 327
           LR +E+L      TL+    + + G+P   + +   PEE +  +A+V  R V+G  DF+ 
Sbjct: 172 LRVIESLNMIAPGTLLVADNIITPGAPEYHKYVNMSPEERRGYQAKV--RNVNGF-DFIG 228

Query: 328 NYVVQFKLPSSAVEGMRRS 384
            + + +K  +   EG+ R+
Sbjct: 229 RWDLIYKTETKEFEGVIRN 247


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 244 LEPLPEEPKAREAQVESRLVDGVADFLENYVV 339
           L+ LP E   RE  VE  L + VAD ++ YV+
Sbjct: 249 LDKLPWEDVRREMVVEKGLKEEVADKIKEYVL 280


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 103 SLTTPRTLPRMFGSESCSAAGIAHATPITIKTTR 2
           S++TP   P  F S + +   + HA P T  ++R
Sbjct: 251 SVSTPGGTPPRFASPALTVESMVHAAPSTTTSSR 284


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +1

Query: 193 VDGVTLDSK-----GSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPS 357
           VDG+ LDS       +P+      P+P    A   Q    L++ +  F++    ++ LP+
Sbjct: 283 VDGIQLDSNFTIESENPKIPTHTHPIPIFEIASSEQTCKNLLEKLIRFIDRASTKYSLPN 342

Query: 358 SAVE 369
            A +
Sbjct: 343 DAAQ 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,912
Number of Sequences: 5004
Number of extensions: 49697
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)