Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-6033
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 31 0.81
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 31 0.81
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 1.1
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 29 5.7
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 28 7.5
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 7.5
11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212 28 9.9
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 28 9.9
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 28 9.9
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 31.5 bits (68), Expect = 0.81
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 664 PAPSRGRCLRSAPRGEDGRPLRNW--SRCACWPA-ASSEQ*YRRPGVRSW 524
P R RCL APRG PLR W SR A W A A E+ GV++W
Sbjct: 123 PPAERRRCLVPAPRGYRA-PLR-WPRSRDAAWYANAPHEELVTEKGVQNW 170
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 31.5 bits (68), Expect = 0.81
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +3
Query: 540 GRRYHCSEEAAGQQAHRDQLRSGRPSSPR----GALRKQRPRLGAGLSMTPKTWPTAP 701
GR + EAAG QA R Q RP++P G R P +P + P++P
Sbjct: 59 GRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSSP 116
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +1
Query: 208 LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 363
L KGSPRS + P P E +E+Q+ DG L++ VVQ PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 142 STLRHRVTSPSTHSLTTPRTLPRMFGSESCSAAGIAHAT 26
ST +R + T PRT+P+ E C +G A AT
Sbjct: 483 STWTYRNNEMNCADRTVPRTVPQPNDHEDCRVSGFAEAT 521
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 180 GDHVGRWRYSGQQRLAQ 230
GD VG WR+ G +RLA+
Sbjct: 450 GDRVGHWRHGGLKRLAE 466
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 268 KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 390
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>11_03_0125 - 10346779-10347282,10347613-10347771,10348063-10348212
Length = 270
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +3
Query: 537 PGRRYHCS---EEAAGQQAHR--DQLRSGRPSSPRGALRKQRPRLGAG-LSMTP-KTWPT 695
PGRR+HC ++ A QQ+ Q+ S +PS P ++ + +L AG + P +T P
Sbjct: 88 PGRRFHCQDIPDDYAKQQSQLAIRQMSSAQPSEP---VQAEPTKLAAGEIEAVPEQTMPD 144
Query: 696 AP 701
P
Sbjct: 145 QP 146
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 540 GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 629
GRR E G+ A D R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440
>05_05_0254 - 23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 562 KKLLASKHTETSYEVVAHPHHEE--HYASSGHGWGQVYR*RPKHGLQRP 702
+ L ++ TSYEV HP EE ++ G +G+V R + Q P
Sbjct: 888 RMLFVARGCSTSYEVARHPGFEEGVYFLDDGRLYGEVAMFRDPNLRQYP 936
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,052,184
Number of Sequences: 37544
Number of extensions: 403854
Number of successful extensions: 1431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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