Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6032
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   1.3  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   3.1  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.1  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   5.4  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   5.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.1  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   7.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   9.4  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 211  DAKELKEHIRE-ALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 357
            D KEL   +RE  L  + A+C +      +   G  I+N+  +WN+L  K
Sbjct: 1636 DWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFK 1685


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +1

Query: 280 QKKGTRRVIGHLINN-----ESKSWNELTAKYDPENKFTAKYEKELRE 408
           + K T+ ++ HL        ESK   +LT +YDP   F A++ + + E
Sbjct: 289 EHKVTKSILPHLPRELQVLLESKRVQKLTEEYDPARMFLARWAEGIVE 336


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 190 DKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNEL 348
           D+++     KEL +     +  E   C    KKGT  +   L  +  K W EL
Sbjct: 143 DREQIVQVIKELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWKEL 195


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 189
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 97  DDKYTDRYDNVNLDEVLSNSRLLQPYIKCIL 189
           D++  D    +N D  L++  LLQ  +KC +
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKCFI 298


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   PVQRYYLTHHQYEFPH 50
           P QR  L+H Q++FPH
Sbjct: 766 PQQRAILSHVQWDFPH 781


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 151 NSRLLQPYIKCILDKDRCAPDAKELKEHIRE 243
           + RL Q YI+ +LDK+  A    +LK+ +R+
Sbjct: 554 DDRLKQLYIEGVLDKEIKALKVSQLKDILRD 584


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 399 LLFVFGCKFIFGVVFSGQLIPGFAFV 322
           LLF F C +IF +V   + +  F  +
Sbjct: 299 LLFTFECLYIFSLVIDQETLSSFELI 324


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 533 FFFFFLRSCINYLFII 486
           F FFFL +CI+ L+I+
Sbjct: 313 FCFFFLTACISALYIL 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,162
Number of Sequences: 5004
Number of extensions: 38359
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)