Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6031
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    69   8e-13
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    34   0.016
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.46 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.6  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   7.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   10.0 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   10.0 

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 19/196 (9%)
 Frame = +3

Query: 144 GQLQGRIVNSPSGKA-FYSFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ 317
           G L G  V   +GK   + F GI YAKPP+G LR++ P + E  +D   D      +C Q
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 318 ------IDPVFAKSYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWGSG-NTNLY 470
                  + V    +  DE+CLFLN++ P+ +      PV+ +IHGG  + G+  +    
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121

Query: 471 GP-DFLVD---RDVVVMTINYRCGALGFLSLNTL--EVP--GNAGIKDIVQAIRWVKDNI 626
            P D   D      ++++  +R    GFL+   L  E P   N G  D    + W   +I
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHI 181

Query: 627 HHFGGNAGNLTIFGES 674
             FGGN  N+ + G S
Sbjct: 182 ESFGGNKENIAVGGIS 197


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +3

Query: 408 PVMIWIHGGGFKWGSGNT-NLYGPDFLVDRDVVVMTINYRCGALGFLSLNTLEVPGNAGI 584
           P  +W HGGG+  G+ NT N +          VV+ ++YR            E P  A I
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAP---------EDPFPACI 151

Query: 585 KDIVQAIRWVKDNIHHFGGNAGNLTIFGES 674
            D  +A+ +  +N    G N   + + G S
Sbjct: 152 DDGWEALLYCYENADTLGINPNKIAVGGSS 181


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 210 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 329
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 286 MPRRKGTCVLKSIQSSRNPMSAMKTAC 366
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 371
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 620 IFHPSNCLNYIFDPSIPWD 564
           IF   N +    DP++PWD
Sbjct: 261 IFFDKNTIKPFHDPTVPWD 279


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 404 ECSISARGVH-V*EQAVFIADIGFREDWIDLSTHVPF 297
           EC  S  GV  + +   FI+  GF E W      +PF
Sbjct: 137 ECQFSEGGVFALLQNDTFISITGFEEPWRKTYASIPF 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,090
Number of Sequences: 5004
Number of extensions: 74524
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)