Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6029
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   6.6  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   6.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   8.7  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    24   8.7  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  TIDFYGEGITSCNKNQTRKI 154
           T DFYG  + SC+ +Q  K+
Sbjct: 21  TYDFYGRRMVSCSADQRVKV 40


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 184 GATISNYVNYNFSGLIFIARC 122
           GA IS+Y NY F    + A C
Sbjct: 135 GADISDYFNYGFDEFTWAAYC 155


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 356 VNELTAHLVLSGYWSP*TSSNVSIIVTAAAPPFKPKRIT 240
           V  + A+++  GY     S N   +V +A  PF PK ++
Sbjct: 385 VEAILANMISKGYMRGYISRNFETVVLSAKDPF-PKNVS 422


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 53  GTNASNEIRTQQMFTIDFYGEGI 121
           G +A  E RT  +F   FYG G+
Sbjct: 66  GIDALEEWRTNPLFKEQFYGSGL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,609
Number of Sequences: 5004
Number of extensions: 36981
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)