Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6029
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   4.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   4.4  
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    27   7.7  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   7.7  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   7.7  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 423 IGRIGYRAPPRVFFYFFFI 367
           IG  G+ APP VF +FF++
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 423 IGRIGYRAPPRVFFYFFFI 367
           IG  G+ APP VF +FF++
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = -1

Query: 184 GATISNYVNYNFSGLIFIARC----YSFTVEVNRE------HLLSTYFIRSIGTRLRDSN 35
           G  I N+V    +G+ FI RC    +SF + +N        +L+ST +  ++ +    +N
Sbjct: 282 GLYIINFVQSKSNGIRFILRCIEVIFSFLITINNSLHCVLCYLMSTKYREAVKSMFNKTN 341

Query: 34  T 32
           T
Sbjct: 342 T 342


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 148 SGLI-FIARCYSFTVEVNRE 92
           SGLI F +RCYS T+E N +
Sbjct: 332 SGLIQFDSRCYSMTIETNEK 351


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 148 SGLI-FIARCYSFTVEVNRE 92
           SGLI F +RCYS T+E N +
Sbjct: 332 SGLIQFDSRCYSMTIETNEK 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,567
Number of Sequences: 27780
Number of extensions: 219238
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)