Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6029
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 280 TIIETLEDVYGLQ*PLNTRWAVSSFTHLSNKKKIKKNSRG 399
           T   T ED+  L+ PL T    +  T + + +  K+++RG
Sbjct: 276 TASSTPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQHTRG 315


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 206 PPAWTHKRC 180
           PPA++H RC
Sbjct: 472 PPAFSHSRC 480


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 206 PPAWTHKRC 180
           PPA++H RC
Sbjct: 472 PPAFSHSRC 480


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 190 TRGATISNYVNYNFSGLIFIA 128
           T GATI NY    F   +FI+
Sbjct: 564 TSGATIVNYSIMIFLSAVFIS 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,320
Number of Sequences: 438
Number of extensions: 3034
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)