Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6028
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82053-6|CAB04832.1|  106|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear recep...    28   7.1  
AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear recep...    28   7.1  
AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    28   9.4  

>Z82053-6|CAB04832.1|  106|Caenorhabditis elegans Hypothetical
           protein T26E3.7 protein.
          Length = 106

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 719 LKFIKPYNGCRER*THFLGNWNNAYELASDVQK 817
           LKF+ PY+GC     HFL N  +A  +  D+ K
Sbjct: 17  LKFLAPYSGCAIG-EHFLDNGKHALIIFDDLSK 48


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 326 VSDEIQKRNSRIASSPSSENERPYRAVCIPVSSLSI 433
           +S EIQ+    +ASS   ENE+P+ A  I VS+  +
Sbjct: 65  ISPEIQRIEDPLASSDEEENEKPF-ARSISVSNADL 99


>Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical
           protein C48D5.1 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 266 SRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENER 391
           S  HS++ T +D  + VP+P   E++         PSS + R
Sbjct: 92  SLFHSLVET-SDQVNTVPKPTKTEVESIPEEFEQKPSSSSHR 132


>Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical
           protein T20G5.4 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 18  NHKKYFFFKKLNILWLITFWWQRKGILKSPWYVSISSE 131
           N+ KYF     N  W + +  +++G+++  +YV++ SE
Sbjct: 177 NYNKYFL--PFNWAWALVYNARKEGLIEGDYYVTVISE 212


>AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 266 SRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENER 391
           S  HS++ T +D  + VP+P   E++         PSS + R
Sbjct: 92  SLFHSLVET-SDQVNTVPKPTKTEVESIPEEFEQKPSSSSHR 132


>AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 266 SRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENER 391
           S  HS++ T +D  + VP+P   E++         PSS + R
Sbjct: 92  SLFHSLVET-SDQVNTVPKPTKTEVESIPEEFEQKPSSSSHR 132


>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 293 QWV*HCDAGYSIQVECAAVGFQRSTSTTQMHKL 195
           +WV  C  G+ I   CA VG    T   +MH++
Sbjct: 130 RWVVWCVLGFFIVYICAVVGLFSQTRRDEMHQM 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,554,623
Number of Sequences: 27780
Number of extensions: 392507
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)