Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6026
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.17 
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   2.7  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    24   6.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    23   8.3  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.3  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 83  YGPKI*HG-PNVLKHDLQHDRNGSWWNHRHNNRN 181
           YG  + H   N ++ DLQH    +  NH H++R+
Sbjct: 404 YGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRS 437


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 104 GPNVLKHDLQHD---RNGSWWNHRHNNRNEYDELH*GTTDDD 220
           G  V+KH + +    RNG+ W+   N+ NE+D    G   D+
Sbjct: 275 GGGVVKHHICNANLMRNGAEWSVYINSANEFDGSDAGARPDE 316


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 218 DWWNAI*LRSWLVGILQHFELLP 286
           DW     L  W+V +  HF LLP
Sbjct: 192 DWVTRHMLVDWIVQVQIHFRLLP 214


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 260 CRQARNVI-RWHSTNRHRLFPSAAHRTHSCC 171
           C  + N++    S+NR RLFP++   ++  C
Sbjct: 341 CEVSYNLLLTCRSSNRFRLFPASTPNSNGLC 371


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 233 WHSTNRHRLFPSAAH 189
           W+   +H LFP  AH
Sbjct: 59  WYVDEKHNLFPKKAH 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,232
Number of Sequences: 5004
Number of extensions: 19819
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)