Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6026
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    26   6.6  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    26   6.6  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    26   6.6  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 125 DLQHDRNGSWWNHRHNNRNEYDELH*-GTTDDDWWNA 232
           D    R  S   HR    N  D LH   ++DD+WW A
Sbjct: 629 DYDPSRENSVAPHRSMGFNYGDILHIINSSDDEWWTA 665


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 125 DLQHDRNGSWWNHRHNNRNEYDELH*-GTTDDDWWNA 232
           D    R  S   HR    N  D LH   ++DD+WW A
Sbjct: 629 DYDPSRENSVAPHRSMGFNYGDILHIINSSDDEWWTA 665


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 125 DLQHDRNGSWWNHRHNNRNEYDELH*-GTTDDDWWNA 232
           D    R  S   HR    N  D LH   ++DD+WW A
Sbjct: 629 DYDPSRENSVAPHRSMGFNYGDILHIINSSDDEWWTA 665


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239 IRWHSTNRHRLFPSAAHRTHSCCYAGDSTKT 147
           ++WH +  H    +   RT  CC    S KT
Sbjct: 364 LKWHRSRLHDAAVANRRRTPECCGMPGSNKT 394


>U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical
           protein F18G5.4 protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 40  TQTYLNVQRFTPRWLWSEDLAWTE 111
           T+++LN+    PR  W+E L W+E
Sbjct: 161 TRSWLNINWMDPRLSWNESL-WSE 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,208
Number of Sequences: 27780
Number of extensions: 117755
Number of successful extensions: 273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)