Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-6025
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   1.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.5  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   7.8  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.8  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 42  YLGSRQAGFSWHGYDRQRYFKYLAFRSRLIVEIGRRENSFNFKQCF 179
           ++G  +  F   G  RQ   + LA   ++++ + +   +FN + CF
Sbjct: 471 FVGHIKDAFKKIGDCRQEQMRLLAVLEQVLINVAKNTPAFNLQSCF 516


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 143 AYFHYKSAPERKVFEISLPIVSVPR---KPCLPTPEIK 39
           AY    ++PE KVF+  +P+   P+   KP  PT   K
Sbjct: 350 AYVAKSTSPELKVFDTVMPVALSPKPAQKPPSPTIHTK 387


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 416 QILKIVLKSYFFTTQYMHSDPENHLF 339
           QIL  VL SY   T   H D   HL+
Sbjct: 366 QILPCVLHSYETLTNVFHRDDSKHLY 391


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 193 GFTKKKHCLKLKLFSRLPISTISRLLNARYLKYRCL 86
           G+ + + C  +  FS +  S  S+LLNA      CL
Sbjct: 479 GYLRSRACEMINRFSEIDWSDKSQLLNAYQAVLNCL 514


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 140 YFHY-KSAPERKVFEISLPIVSVPRK-PCL-PTPEIKK 36
           YF+   S+P RK+  I LP+  + RK P + P  E+K+
Sbjct: 200 YFNADSSSPLRKLSPIELPVTPIRRKTPTINPNSELKR 237


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 362 YACIA**KNMISVLFSGFETKCSIY 436
           Y C+A  KN++S +   FE  C I+
Sbjct: 449 YICLALAKNVVSHVLPVFEISCEIF 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,605
Number of Sequences: 5004
Number of extensions: 43817
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)